Hb_006502_050

Information

Type -
Description -
Location Contig6502: 34601-38338
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52556: 37712-38347
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006502_050 0.0 - - -
2 Hb_002234_190 0.191581488 - - PREDICTED: putative non-specific lipid-transfer protein 14 [Jatropha curcas]
3 Hb_073395_010 0.1995741613 - - -
4 Hb_021888_050 0.1999088009 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
5 Hb_001902_190 0.2028674079 - - PREDICTED: oxalate--CoA ligase [Jatropha curcas]
6 Hb_000345_200 0.2055883768 - - PREDICTED: uncharacterized protein LOC105647522 [Jatropha curcas]
7 Hb_000841_060 0.2077091873 transcription factor TF Family: ERF hypothetical protein POPTR_0015s06470g [Populus trichocarpa]
8 Hb_001183_010 0.2094038501 - - -
9 Hb_002636_080 0.2138510708 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
10 Hb_000732_250 0.2164588513 - - PREDICTED: external alternative NAD(P)H-ubiquinone oxidoreductase B2, mitochondrial-like [Populus euphratica]
11 Hb_000649_240 0.218116692 - - PREDICTED: probable peroxygenase 4 [Jatropha curcas]
12 Hb_087596_010 0.2250966828 - - PREDICTED: disease resistance protein RPS4-like [Jatropha curcas]
13 Hb_002341_020 0.2273049845 - - PREDICTED: pyruvate decarboxylase 2 [Populus euphratica]
14 Hb_000451_070 0.2287161503 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
15 Hb_126380_010 0.2306386257 desease resistance Gene Name: NB-ARC ATP binding protein, putative [Ricinus communis]
16 Hb_015690_020 0.233885477 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
17 Hb_001049_020 0.2364139671 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001894_050 0.238453878 - - PREDICTED: AMSH-like ubiquitin thioesterase 2 [Jatropha curcas]
19 Hb_008173_030 0.2405108338 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
20 Hb_000914_090 0.2418285169 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]

Gene co-expression network

sample Hb_006502_050 Hb_006502_050 Hb_002234_190 Hb_002234_190 Hb_006502_050--Hb_002234_190 Hb_073395_010 Hb_073395_010 Hb_006502_050--Hb_073395_010 Hb_021888_050 Hb_021888_050 Hb_006502_050--Hb_021888_050 Hb_001902_190 Hb_001902_190 Hb_006502_050--Hb_001902_190 Hb_000345_200 Hb_000345_200 Hb_006502_050--Hb_000345_200 Hb_000841_060 Hb_000841_060 Hb_006502_050--Hb_000841_060 Hb_002234_190--Hb_073395_010 Hb_037767_010 Hb_037767_010 Hb_002234_190--Hb_037767_010 Hb_081745_010 Hb_081745_010 Hb_002234_190--Hb_081745_010 Hb_002876_290 Hb_002876_290 Hb_002234_190--Hb_002876_290 Hb_002234_190--Hb_001902_190 Hb_000025_340 Hb_000025_340 Hb_073395_010--Hb_000025_340 Hb_073395_010--Hb_002876_290 Hb_073395_010--Hb_001902_190 Hb_145629_010 Hb_145629_010 Hb_073395_010--Hb_145629_010 Hb_005143_040 Hb_005143_040 Hb_073395_010--Hb_005143_040 Hb_115241_010 Hb_115241_010 Hb_021888_050--Hb_115241_010 Hb_000975_360 Hb_000975_360 Hb_021888_050--Hb_000975_360 Hb_000948_080 Hb_000948_080 Hb_021888_050--Hb_000948_080 Hb_000649_240 Hb_000649_240 Hb_021888_050--Hb_000649_240 Hb_005568_080 Hb_005568_080 Hb_021888_050--Hb_005568_080 Hb_021888_050--Hb_001902_190 Hb_004230_040 Hb_004230_040 Hb_001902_190--Hb_004230_040 Hb_000227_060 Hb_000227_060 Hb_001902_190--Hb_000227_060 Hb_000451_070 Hb_000451_070 Hb_001902_190--Hb_000451_070 Hb_001902_190--Hb_115241_010 Hb_002961_060 Hb_002961_060 Hb_001902_190--Hb_002961_060 Hb_002042_130 Hb_002042_130 Hb_001902_190--Hb_002042_130 Hb_126380_010 Hb_126380_010 Hb_000345_200--Hb_126380_010 Hb_001205_030 Hb_001205_030 Hb_000345_200--Hb_001205_030 Hb_000732_250 Hb_000732_250 Hb_000345_200--Hb_000732_250 Hb_189208_020 Hb_189208_020 Hb_000345_200--Hb_189208_020 Hb_001894_050 Hb_001894_050 Hb_000345_200--Hb_001894_050 Hb_001794_060 Hb_001794_060 Hb_000345_200--Hb_001794_060 Hb_000329_250 Hb_000329_250 Hb_000841_060--Hb_000329_250 Hb_104265_040 Hb_104265_040 Hb_000841_060--Hb_104265_040 Hb_005137_060 Hb_005137_060 Hb_000841_060--Hb_005137_060 Hb_008695_050 Hb_008695_050 Hb_000841_060--Hb_008695_050 Hb_002636_080 Hb_002636_080 Hb_000841_060--Hb_002636_080 Hb_001222_080 Hb_001222_080 Hb_000841_060--Hb_001222_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.259021 4.1348 0 1.33034 0.278515 1.05821
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.80675 2.94017 1.43115 1.7645 0.313571

CAGE analysis