Hb_006502_090

Information

Type -
Description -
Location Contig6502: 73521-76770
Sequence    

Annotation

kegg
ID rcu:RCOM_1412310
description mRNA turnover protein 4 mrt4, putative
nr
ID XP_012065661.1
description PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
swissprot
ID A4FV84
description mRNA turnover protein 4 homolog OS=Bos taurus GN=MRTO4 PE=2 SV=1
trembl
ID A0A067LGD2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16917 PE=3 SV=1
Gene Ontology
ID GO:0005622
description mrna turnover protein 4 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52572: 76478-76735
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006502_090 0.0 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
2 Hb_002044_080 0.062940599 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
3 Hb_001545_120 0.0749525806 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
4 Hb_013607_030 0.0827638782 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
5 Hb_007632_030 0.0831090508 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]
6 Hb_017904_010 0.0849003023 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
7 Hb_000120_790 0.087076655 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H isoform X1 [Jatropha curcas]
8 Hb_008554_030 0.0873045335 - - PREDICTED: dnaJ homolog 1, mitochondrial-like [Jatropha curcas]
9 Hb_002027_250 0.0875510226 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000170_210 0.0877158833 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_008785_040 0.0881590252 - - PREDICTED: DNA repair protein UVH3 [Jatropha curcas]
12 Hb_006913_030 0.088680238 - - PREDICTED: quinone oxidoreductase-like protein 2 homolog [Jatropha curcas]
13 Hb_009421_020 0.0898936571 - - PREDICTED: caltractin-like [Jatropha curcas]
14 Hb_002942_190 0.0899887762 - - poly(A) polymerase, putative [Ricinus communis]
15 Hb_000920_180 0.0914211887 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
16 Hb_005697_060 0.092087246 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
17 Hb_001258_090 0.0927315574 - - PREDICTED: protein spt2-like [Jatropha curcas]
18 Hb_000365_120 0.0935714496 - - PREDICTED: bifunctional protein FolD 1, mitochondrial [Jatropha curcas]
19 Hb_004100_080 0.0949869067 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000107_620 0.0955211626 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]

Gene co-expression network

sample Hb_006502_090 Hb_006502_090 Hb_002044_080 Hb_002044_080 Hb_006502_090--Hb_002044_080 Hb_001545_120 Hb_001545_120 Hb_006502_090--Hb_001545_120 Hb_013607_030 Hb_013607_030 Hb_006502_090--Hb_013607_030 Hb_007632_030 Hb_007632_030 Hb_006502_090--Hb_007632_030 Hb_017904_010 Hb_017904_010 Hb_006502_090--Hb_017904_010 Hb_000120_790 Hb_000120_790 Hb_006502_090--Hb_000120_790 Hb_000056_200 Hb_000056_200 Hb_002044_080--Hb_000056_200 Hb_058999_020 Hb_058999_020 Hb_002044_080--Hb_058999_020 Hb_001242_060 Hb_001242_060 Hb_002044_080--Hb_001242_060 Hb_002044_080--Hb_000120_790 Hb_000085_050 Hb_000085_050 Hb_002044_080--Hb_000085_050 Hb_001545_120--Hb_002044_080 Hb_000808_230 Hb_000808_230 Hb_001545_120--Hb_000808_230 Hb_011673_030 Hb_011673_030 Hb_001545_120--Hb_011673_030 Hb_001776_140 Hb_001776_140 Hb_001545_120--Hb_001776_140 Hb_004600_040 Hb_004600_040 Hb_001545_120--Hb_004600_040 Hb_027295_050 Hb_027295_050 Hb_013607_030--Hb_027295_050 Hb_004100_080 Hb_004100_080 Hb_013607_030--Hb_004100_080 Hb_000317_050 Hb_000317_050 Hb_013607_030--Hb_000317_050 Hb_002013_020 Hb_002013_020 Hb_013607_030--Hb_002013_020 Hb_002154_100 Hb_002154_100 Hb_013607_030--Hb_002154_100 Hb_000365_120 Hb_000365_120 Hb_007632_030--Hb_000365_120 Hb_009421_020 Hb_009421_020 Hb_007632_030--Hb_009421_020 Hb_156973_010 Hb_156973_010 Hb_007632_030--Hb_156973_010 Hb_004841_010 Hb_004841_010 Hb_007632_030--Hb_004841_010 Hb_007632_030--Hb_000120_790 Hb_023386_020 Hb_023386_020 Hb_007632_030--Hb_023386_020 Hb_002205_070 Hb_002205_070 Hb_017904_010--Hb_002205_070 Hb_000107_620 Hb_000107_620 Hb_017904_010--Hb_000107_620 Hb_111985_050 Hb_111985_050 Hb_017904_010--Hb_111985_050 Hb_011571_010 Hb_011571_010 Hb_017904_010--Hb_011571_010 Hb_009838_080 Hb_009838_080 Hb_017904_010--Hb_009838_080 Hb_017904_010--Hb_002044_080 Hb_000342_130 Hb_000342_130 Hb_000120_790--Hb_000342_130 Hb_007691_030 Hb_007691_030 Hb_000120_790--Hb_007691_030 Hb_003010_030 Hb_003010_030 Hb_000120_790--Hb_003010_030 Hb_000093_160 Hb_000093_160 Hb_000120_790--Hb_000093_160 Hb_000120_790--Hb_001776_140 Hb_001006_140 Hb_001006_140 Hb_000120_790--Hb_001006_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.7463 10.4024 11.984 5.49673 19.9931 21.9234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.7057 28.9568 15.9961 13.6439 16.244

CAGE analysis