Hb_006503_010

Information

Type -
Description -
Location Contig6503: 45090-52429
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006503_010 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_000216_010 0.1113630489 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
3 Hb_009775_040 0.1820356117 - - PREDICTED: probable glutathione S-transferase parC [Vitis vinifera]
4 Hb_143629_030 0.1909143523 - - hypothetical protein JCGZ_23143 [Jatropha curcas]
5 Hb_001470_070 0.202371094 - - metal ion binding protein, putative [Ricinus communis]
6 Hb_002918_130 0.2343880859 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 12 [Jatropha curcas]
7 Hb_002675_200 0.2512861233 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA1, putative [Ricinus communis]
8 Hb_034904_010 0.2710738512 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
9 Hb_007849_010 0.2752624808 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Populus euphratica]
10 Hb_005144_190 0.2769534357 - - hypothetical protein F383_09558 [Gossypium arboreum]
11 Hb_002571_040 0.2839864666 - - hypothetical protein RCOM_1321060 [Ricinus communis]
12 Hb_000049_240 0.2892119802 - - PREDICTED: uncharacterized protein LOC105644456 [Jatropha curcas]
13 Hb_007145_010 0.2897739657 - - ammonium transporter 3.1-like protein [Camellia sinensis]
14 Hb_002211_040 0.2965115754 - - PREDICTED: subtilisin-like protease SBT3.5 [Jatropha curcas]
15 Hb_001104_050 0.2975594743 - - -
16 Hb_000359_320 0.3016078354 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
17 Hb_000772_060 0.304282658 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000112_100 0.3118466056 - - glutamate receptor 2 plant, putative [Ricinus communis]
19 Hb_001214_150 0.3190912432 - - PREDICTED: uncharacterized protein LOC102624288 [Citrus sinensis]
20 Hb_007425_020 0.3202869497 transcription factor TF Family: ERF PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like [Jatropha curcas]

Gene co-expression network

sample Hb_006503_010 Hb_006503_010 Hb_000216_010 Hb_000216_010 Hb_006503_010--Hb_000216_010 Hb_009775_040 Hb_009775_040 Hb_006503_010--Hb_009775_040 Hb_143629_030 Hb_143629_030 Hb_006503_010--Hb_143629_030 Hb_001470_070 Hb_001470_070 Hb_006503_010--Hb_001470_070 Hb_002918_130 Hb_002918_130 Hb_006503_010--Hb_002918_130 Hb_002675_200 Hb_002675_200 Hb_006503_010--Hb_002675_200 Hb_000216_010--Hb_143629_030 Hb_000216_010--Hb_009775_040 Hb_002571_040 Hb_002571_040 Hb_000216_010--Hb_002571_040 Hb_139569_010 Hb_139569_010 Hb_000216_010--Hb_139569_010 Hb_000216_010--Hb_001470_070 Hb_006120_170 Hb_006120_170 Hb_009775_040--Hb_006120_170 Hb_009775_040--Hb_143629_030 Hb_000359_320 Hb_000359_320 Hb_009775_040--Hb_000359_320 Hb_004235_060 Hb_004235_060 Hb_009775_040--Hb_004235_060 Hb_002301_200 Hb_002301_200 Hb_143629_030--Hb_002301_200 Hb_002211_040 Hb_002211_040 Hb_143629_030--Hb_002211_040 Hb_002401_010 Hb_002401_010 Hb_143629_030--Hb_002401_010 Hb_001470_070--Hb_002675_200 Hb_007145_010 Hb_007145_010 Hb_001470_070--Hb_007145_010 Hb_005144_190 Hb_005144_190 Hb_001470_070--Hb_005144_190 Hb_001322_030 Hb_001322_030 Hb_001470_070--Hb_001322_030 Hb_034904_010 Hb_034904_010 Hb_001470_070--Hb_034904_010 Hb_000112_100 Hb_000112_100 Hb_002918_130--Hb_000112_100 Hb_007849_010 Hb_007849_010 Hb_002918_130--Hb_007849_010 Hb_020178_010 Hb_020178_010 Hb_002918_130--Hb_020178_010 Hb_009736_010 Hb_009736_010 Hb_002918_130--Hb_009736_010 Hb_007101_290 Hb_007101_290 Hb_002918_130--Hb_007101_290 Hb_128524_020 Hb_128524_020 Hb_002675_200--Hb_128524_020 Hb_011618_100 Hb_011618_100 Hb_002675_200--Hb_011618_100 Hb_128486_010 Hb_128486_010 Hb_002675_200--Hb_128486_010 Hb_089140_110 Hb_089140_110 Hb_002675_200--Hb_089140_110 Hb_008768_020 Hb_008768_020 Hb_002675_200--Hb_008768_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0105473 0.00430872 0.00432079 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0103895 0 0.00411873 0

CAGE analysis