Hb_006508_030

Information

Type -
Description -
Location Contig6508: 86684-92563
Sequence    

Annotation

kegg
ID pop:POPTR_0016s03470g
description POPTRDRAFT_734755; CDPK-related kinase 1 family protein
nr
ID XP_012084524.1
description PREDICTED: CDPK-related kinase 1-like [Jatropha curcas]
swissprot
ID O80673
description CDPK-related kinase 1 OS=Arabidopsis thaliana GN=CRK1 PE=1 SV=1
trembl
ID A0A067K6N5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20019 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cdpk-related kinase 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52573: 86176-92546
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006508_030 0.0 - - PREDICTED: CDPK-related kinase 1-like [Jatropha curcas]
2 Hb_002814_060 0.1100597292 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
3 Hb_018202_050 0.1144811962 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
4 Hb_000384_080 0.1166208796 - - PREDICTED: RING-H2 finger protein ATL7-like isoform X2 [Jatropha curcas]
5 Hb_001369_350 0.1216784667 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
6 Hb_012528_020 0.1240578843 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Jatropha curcas]
7 Hb_000261_100 0.1249275217 - - PREDICTED: beta-galactosidase 9 isoform X2 [Jatropha curcas]
8 Hb_001989_050 0.1271848313 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 5 [Jatropha curcas]
9 Hb_000630_030 0.1275949907 - - PREDICTED: E3 ubiquitin-protein ligase RGLG2 isoform X1 [Populus euphratica]
10 Hb_074197_020 0.1306345853 - - PREDICTED: uncharacterized protein LOC105645948 [Jatropha curcas]
11 Hb_086287_010 0.1346190786 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
12 Hb_001031_040 0.1360157154 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003894_040 0.1387976648 - - nucleotide binding protein, putative [Ricinus communis]
14 Hb_000879_160 0.1390210532 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
15 Hb_004701_050 0.140168545 - - alpha1 family protein [Populus trichocarpa]
16 Hb_073973_150 0.1418519191 - - PREDICTED: aminoacylase-1 isoform X1 [Jatropha curcas]
17 Hb_004195_060 0.1426615019 - - PREDICTED: uncharacterized protein LOC105803780 isoform X1 [Gossypium raimondii]
18 Hb_006573_170 0.1447906395 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001375_040 0.1451060752 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
20 Hb_150346_010 0.1458261066 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]

Gene co-expression network

sample Hb_006508_030 Hb_006508_030 Hb_002814_060 Hb_002814_060 Hb_006508_030--Hb_002814_060 Hb_018202_050 Hb_018202_050 Hb_006508_030--Hb_018202_050 Hb_000384_080 Hb_000384_080 Hb_006508_030--Hb_000384_080 Hb_001369_350 Hb_001369_350 Hb_006508_030--Hb_001369_350 Hb_012528_020 Hb_012528_020 Hb_006508_030--Hb_012528_020 Hb_000261_100 Hb_000261_100 Hb_006508_030--Hb_000261_100 Hb_007456_040 Hb_007456_040 Hb_002814_060--Hb_007456_040 Hb_086287_010 Hb_086287_010 Hb_002814_060--Hb_086287_010 Hb_074197_020 Hb_074197_020 Hb_002814_060--Hb_074197_020 Hb_001194_020 Hb_001194_020 Hb_002814_060--Hb_001194_020 Hb_002784_030 Hb_002784_030 Hb_002814_060--Hb_002784_030 Hb_003894_040 Hb_003894_040 Hb_018202_050--Hb_003894_040 Hb_000347_270 Hb_000347_270 Hb_018202_050--Hb_000347_270 Hb_018202_050--Hb_001369_350 Hb_002092_100 Hb_002092_100 Hb_018202_050--Hb_002092_100 Hb_002902_020 Hb_002902_020 Hb_018202_050--Hb_002902_020 Hb_011918_050 Hb_011918_050 Hb_018202_050--Hb_011918_050 Hb_004701_050 Hb_004701_050 Hb_000384_080--Hb_004701_050 Hb_000384_080--Hb_001369_350 Hb_003388_030 Hb_003388_030 Hb_000384_080--Hb_003388_030 Hb_001369_040 Hb_001369_040 Hb_000384_080--Hb_001369_040 Hb_001504_040 Hb_001504_040 Hb_000384_080--Hb_001504_040 Hb_002631_140 Hb_002631_140 Hb_000384_080--Hb_002631_140 Hb_001178_150 Hb_001178_150 Hb_001369_350--Hb_001178_150 Hb_000935_090 Hb_000935_090 Hb_001369_350--Hb_000935_090 Hb_010925_020 Hb_010925_020 Hb_001369_350--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_001369_350--Hb_002307_350 Hb_000120_620 Hb_000120_620 Hb_001369_350--Hb_000120_620 Hb_000025_650 Hb_000025_650 Hb_001369_350--Hb_000025_650 Hb_007123_050 Hb_007123_050 Hb_012528_020--Hb_007123_050 Hb_001059_130 Hb_001059_130 Hb_012528_020--Hb_001059_130 Hb_002475_040 Hb_002475_040 Hb_012528_020--Hb_002475_040 Hb_005323_010 Hb_005323_010 Hb_012528_020--Hb_005323_010 Hb_158092_080 Hb_158092_080 Hb_012528_020--Hb_158092_080 Hb_001989_050 Hb_001989_050 Hb_012528_020--Hb_001989_050 Hb_000780_190 Hb_000780_190 Hb_000261_100--Hb_000780_190 Hb_000284_230 Hb_000284_230 Hb_000261_100--Hb_000284_230 Hb_000035_410 Hb_000035_410 Hb_000261_100--Hb_000035_410 Hb_000261_100--Hb_004701_050 Hb_000183_050 Hb_000183_050 Hb_000261_100--Hb_000183_050 Hb_004109_370 Hb_004109_370 Hb_000261_100--Hb_004109_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9392 12.5758 8.79846 14.1513 15.2584 14.953
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.54691 1.1786 0.882537 12.5706 11.5697

CAGE analysis