Hb_006520_040

Information

Type -
Description -
Location Contig6520: 60481-69966
Sequence    

Annotation

kegg
ID rcu:RCOM_0410030
description methylmalonate-semialdehyde dehydrogenase, putative (EC:1.2.1.27)
nr
ID XP_012081703.1
description PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
swissprot
ID Q0WM29
description Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Arabidopsis thaliana GN=ALDH6B2 PE=2 SV=2
trembl
ID B9T2B3
description Methylmalonate-semialdehyde dehydrogenase, putative OS=Ricinus communis GN=RCOM_0410030 PE=4 SV=1
Gene Ontology
ID GO:0004491
description methylmalonate-semialdehyde dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52583: 60475-61066 , PASA_asmbl_52585: 62011-62592 , PASA_asmbl_52586: 62633-64317 , PASA_asmbl_52587: 64720-69844 , PASA_asmbl_52589: 64720-69844
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006520_040 0.0 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]
2 Hb_001225_040 0.0546146948 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]
3 Hb_000981_030 0.0673256424 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105640649 [Jatropha curcas]
4 Hb_000920_300 0.069715618 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
5 Hb_002026_210 0.0699806566 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
6 Hb_003517_040 0.0706115453 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]
7 Hb_003913_070 0.0711143196 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
8 Hb_000976_140 0.0721247826 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]
9 Hb_000189_600 0.0722401141 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
10 Hb_004143_100 0.0729347552 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005730_040 0.073598221 - - hypothetical protein PRUPE_ppa004338mg [Prunus persica]
12 Hb_003734_010 0.0740811009 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
13 Hb_021374_010 0.0759240514 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-A1 [Populus euphratica]
14 Hb_003943_010 0.0762386173 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006059_040 0.0772696711 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
16 Hb_000521_330 0.0774817931 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006831_140 0.0783115719 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
18 Hb_001089_030 0.0799399616 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
19 Hb_011537_050 0.0803961938 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
20 Hb_000130_410 0.0806346101 - - PREDICTED: uncharacterized protein LOC105635730 [Jatropha curcas]

Gene co-expression network

sample Hb_006520_040 Hb_006520_040 Hb_001225_040 Hb_001225_040 Hb_006520_040--Hb_001225_040 Hb_000981_030 Hb_000981_030 Hb_006520_040--Hb_000981_030 Hb_000920_300 Hb_000920_300 Hb_006520_040--Hb_000920_300 Hb_002026_210 Hb_002026_210 Hb_006520_040--Hb_002026_210 Hb_003517_040 Hb_003517_040 Hb_006520_040--Hb_003517_040 Hb_003913_070 Hb_003913_070 Hb_006520_040--Hb_003913_070 Hb_004837_180 Hb_004837_180 Hb_001225_040--Hb_004837_180 Hb_005653_090 Hb_005653_090 Hb_001225_040--Hb_005653_090 Hb_005730_040 Hb_005730_040 Hb_001225_040--Hb_005730_040 Hb_003030_060 Hb_003030_060 Hb_001225_040--Hb_003030_060 Hb_011537_050 Hb_011537_050 Hb_001225_040--Hb_011537_050 Hb_001500_140 Hb_001500_140 Hb_000981_030--Hb_001500_140 Hb_179306_020 Hb_179306_020 Hb_000981_030--Hb_179306_020 Hb_001860_030 Hb_001860_030 Hb_000981_030--Hb_001860_030 Hb_005663_110 Hb_005663_110 Hb_000981_030--Hb_005663_110 Hb_000170_090 Hb_000170_090 Hb_000981_030--Hb_000170_090 Hb_000920_300--Hb_003913_070 Hb_002456_010 Hb_002456_010 Hb_000920_300--Hb_002456_010 Hb_002641_030 Hb_002641_030 Hb_000920_300--Hb_002641_030 Hb_004934_050 Hb_004934_050 Hb_000920_300--Hb_004934_050 Hb_001671_100 Hb_001671_100 Hb_000920_300--Hb_001671_100 Hb_028512_020 Hb_028512_020 Hb_002026_210--Hb_028512_020 Hb_011849_040 Hb_011849_040 Hb_002026_210--Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_002026_210--Hb_000009_500 Hb_000614_210 Hb_000614_210 Hb_002026_210--Hb_000614_210 Hb_000923_010 Hb_000923_010 Hb_002026_210--Hb_000923_010 Hb_000340_530 Hb_000340_530 Hb_002026_210--Hb_000340_530 Hb_000976_140 Hb_000976_140 Hb_003517_040--Hb_000976_140 Hb_001789_110 Hb_001789_110 Hb_003517_040--Hb_001789_110 Hb_000138_100 Hb_000138_100 Hb_003517_040--Hb_000138_100 Hb_003734_010 Hb_003734_010 Hb_003517_040--Hb_003734_010 Hb_000441_090 Hb_000441_090 Hb_003517_040--Hb_000441_090 Hb_002263_020 Hb_002263_020 Hb_003517_040--Hb_002263_020 Hb_003913_070--Hb_003734_010 Hb_000111_290 Hb_000111_290 Hb_003913_070--Hb_000111_290 Hb_001417_030 Hb_001417_030 Hb_003913_070--Hb_001417_030 Hb_001999_310 Hb_001999_310 Hb_003913_070--Hb_001999_310 Hb_001814_030 Hb_001814_030 Hb_003913_070--Hb_001814_030 Hb_003411_040 Hb_003411_040 Hb_003913_070--Hb_003411_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.21963 13.2129 8.25201 10.9214 7.00639 10.9565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.94338 10.0008 5.74681 12.666 10.7861

CAGE analysis