Hb_006528_020

Information

Type -
Description -
Location Contig6528: 26142-30065
Sequence    

Annotation

kegg
ID rcu:RCOM_1719510
description hypothetical protein
nr
ID XP_002521080.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6NLW5
description Protein XRI1 OS=Arabidopsis thaliana GN=XRI1 PE=1 SV=2
trembl
ID B9S511
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1719510 PE=4 SV=1
Gene Ontology
ID GO:0006281
description protein xri1 isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52594: 26125-30033 , PASA_asmbl_52595: 26141-28681
cDNA
(Sanger)
(ID:Location)		 011_N12.ab1: 26141-28661 , 025_J02.ab1: 26141-28681 , 051_O15.ab1: 26221-28681

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006528_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001776_100 0.103192985 - - PREDICTED: outer envelope pore protein 16, chloroplastic [Jatropha curcas]
3 Hb_000731_210 0.1195996606 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005542_030 0.1201540737 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 70 isoform X2 [Jatropha curcas]
5 Hb_002301_370 0.1295259998 - - hypothetical protein JCGZ_21454 [Jatropha curcas]
6 Hb_004678_030 0.1355784911 - - fructokinase [Manihot esculenta]
7 Hb_000318_170 0.1419175868 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
8 Hb_001019_160 0.1437221624 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001440_010 0.1460090739 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
10 Hb_003106_230 0.1477157506 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
11 Hb_002235_370 0.1496264003 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
12 Hb_000230_360 0.151716709 - - PREDICTED: BI1-like protein [Jatropha curcas]
13 Hb_000024_130 0.1528563674 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000163_180 0.1556884958 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
15 Hb_005357_120 0.1564454451 transcription factor TF Family: MYB-related -
16 Hb_002999_080 0.1567299947 transcription factor TF Family: G2-like PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
17 Hb_004421_010 0.1590385958 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
18 Hb_005582_030 0.1596486091 - - PREDICTED: protein N-lysine methyltransferase METTL21A-like [Jatropha curcas]
19 Hb_000009_150 0.1610384359 - - carbohydrate transporter, putative [Ricinus communis]
20 Hb_001597_030 0.161256548 - - PREDICTED: uncharacterized protein LOC104445128 isoform X1 [Eucalyptus grandis]

Gene co-expression network

sample Hb_006528_020 Hb_006528_020 Hb_001776_100 Hb_001776_100 Hb_006528_020--Hb_001776_100 Hb_000731_210 Hb_000731_210 Hb_006528_020--Hb_000731_210 Hb_005542_030 Hb_005542_030 Hb_006528_020--Hb_005542_030 Hb_002301_370 Hb_002301_370 Hb_006528_020--Hb_002301_370 Hb_004678_030 Hb_004678_030 Hb_006528_020--Hb_004678_030 Hb_000318_170 Hb_000318_170 Hb_006528_020--Hb_000318_170 Hb_004421_010 Hb_004421_010 Hb_001776_100--Hb_004421_010 Hb_006634_090 Hb_006634_090 Hb_001776_100--Hb_006634_090 Hb_002450_180 Hb_002450_180 Hb_001776_100--Hb_002450_180 Hb_000411_050 Hb_000411_050 Hb_001776_100--Hb_000411_050 Hb_002078_250 Hb_002078_250 Hb_001776_100--Hb_002078_250 Hb_000731_210--Hb_002301_370 Hb_000024_130 Hb_000024_130 Hb_000731_210--Hb_000024_130 Hb_001048_100 Hb_001048_100 Hb_000731_210--Hb_001048_100 Hb_031385_010 Hb_031385_010 Hb_000731_210--Hb_031385_010 Hb_000731_210--Hb_000318_170 Hb_003106_230 Hb_003106_230 Hb_000731_210--Hb_003106_230 Hb_043987_010 Hb_043987_010 Hb_005542_030--Hb_043987_010 Hb_000163_180 Hb_000163_180 Hb_005542_030--Hb_000163_180 Hb_000152_170 Hb_000152_170 Hb_005542_030--Hb_000152_170 Hb_002361_010 Hb_002361_010 Hb_005542_030--Hb_002361_010 Hb_000482_070 Hb_000482_070 Hb_005542_030--Hb_000482_070 Hb_000230_360 Hb_000230_360 Hb_002301_370--Hb_000230_360 Hb_001440_010 Hb_001440_010 Hb_002301_370--Hb_001440_010 Hb_002301_370--Hb_031385_010 Hb_002301_370--Hb_001048_100 Hb_000398_140 Hb_000398_140 Hb_002301_370--Hb_000398_140 Hb_000654_050 Hb_000654_050 Hb_004678_030--Hb_000654_050 Hb_000027_170 Hb_000027_170 Hb_004678_030--Hb_000027_170 Hb_002463_050 Hb_002463_050 Hb_004678_030--Hb_002463_050 Hb_001019_160 Hb_001019_160 Hb_004678_030--Hb_001019_160 Hb_000061_310 Hb_000061_310 Hb_004678_030--Hb_000061_310 Hb_005245_140 Hb_005245_140 Hb_004678_030--Hb_005245_140 Hb_005485_070 Hb_005485_070 Hb_000318_170--Hb_005485_070 Hb_000791_050 Hb_000791_050 Hb_000318_170--Hb_000791_050 Hb_000309_030 Hb_000309_030 Hb_000318_170--Hb_000309_030 Hb_000116_240 Hb_000116_240 Hb_000318_170--Hb_000116_240 Hb_007575_030 Hb_007575_030 Hb_000318_170--Hb_007575_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.255036 8.71647 13.3293 13.7599 0.115738 0.600306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58714 0.387534 0 7.80025 5.79134

CAGE analysis