Hb_006538_080

Information

Type -
Description -
Location Contig6538: 72893-77125
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13380g
description hypothetical protein
nr
ID XP_012082099.1
description PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
swissprot
ID Q9C942
description Caffeoylshikimate esterase OS=Arabidopsis thaliana GN=CSE PE=1 SV=1
trembl
ID A0A067KAX6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18336 PE=4 SV=1
Gene Ontology
ID GO:0047372
description caffeoylshikimate esterase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52607: 73197-77120
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006538_080 0.0 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
2 Hb_014068_050 0.0972264777 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
3 Hb_000225_060 0.1084109463 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
4 Hb_002301_170 0.1172207503 - - MAC/Perforin domain-containing protein [Theobroma cacao]
5 Hb_004631_210 0.120876513 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
6 Hb_050847_050 0.1242988968 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
7 Hb_000111_180 0.1289483211 - - PREDICTED: U-box domain-containing protein 4 [Jatropha curcas]
8 Hb_000512_010 0.1325416929 - - PREDICTED: uncharacterized protein LOC105650728 [Jatropha curcas]
9 Hb_001357_310 0.132615298 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
10 Hb_010775_030 0.1333418274 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
11 Hb_000071_070 0.1347664507 - - PREDICTED: U-box domain-containing protein 33-like [Jatropha curcas]
12 Hb_006060_020 0.1371977877 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
13 Hb_000402_210 0.138283569 - - hypothetical protein EUGRSUZ_B032971, partial [Eucalyptus grandis]
14 Hb_007382_120 0.13854133 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
15 Hb_000019_040 0.1399426055 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
16 Hb_001268_120 0.1405886527 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001279_170 0.1406594948 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
18 Hb_007257_060 0.1407014207 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
19 Hb_000000_230 0.1424153239 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
20 Hb_006588_060 0.1429315963 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]

Gene co-expression network

sample Hb_006538_080 Hb_006538_080 Hb_014068_050 Hb_014068_050 Hb_006538_080--Hb_014068_050 Hb_000225_060 Hb_000225_060 Hb_006538_080--Hb_000225_060 Hb_002301_170 Hb_002301_170 Hb_006538_080--Hb_002301_170 Hb_004631_210 Hb_004631_210 Hb_006538_080--Hb_004631_210 Hb_050847_050 Hb_050847_050 Hb_006538_080--Hb_050847_050 Hb_000111_180 Hb_000111_180 Hb_006538_080--Hb_000111_180 Hb_014068_050--Hb_000111_180 Hb_014068_050--Hb_002301_170 Hb_000512_010 Hb_000512_010 Hb_014068_050--Hb_000512_010 Hb_052764_030 Hb_052764_030 Hb_014068_050--Hb_052764_030 Hb_000205_240 Hb_000205_240 Hb_014068_050--Hb_000205_240 Hb_110560_010 Hb_110560_010 Hb_000225_060--Hb_110560_010 Hb_000099_150 Hb_000099_150 Hb_000225_060--Hb_000099_150 Hb_009620_020 Hb_009620_020 Hb_000225_060--Hb_009620_020 Hb_001102_240 Hb_001102_240 Hb_000225_060--Hb_001102_240 Hb_002701_010 Hb_002701_010 Hb_000225_060--Hb_002701_010 Hb_002301_170--Hb_052764_030 Hb_009486_160 Hb_009486_160 Hb_002301_170--Hb_009486_160 Hb_001439_230 Hb_001439_230 Hb_002301_170--Hb_001439_230 Hb_001862_110 Hb_001862_110 Hb_002301_170--Hb_001862_110 Hb_003711_010 Hb_003711_010 Hb_002301_170--Hb_003711_010 Hb_000363_120 Hb_000363_120 Hb_002301_170--Hb_000363_120 Hb_001341_100 Hb_001341_100 Hb_004631_210--Hb_001341_100 Hb_003327_070 Hb_003327_070 Hb_004631_210--Hb_003327_070 Hb_000997_180 Hb_000997_180 Hb_004631_210--Hb_000997_180 Hb_000699_230 Hb_000699_230 Hb_004631_210--Hb_000699_230 Hb_000071_070 Hb_000071_070 Hb_004631_210--Hb_000071_070 Hb_006588_060 Hb_006588_060 Hb_050847_050--Hb_006588_060 Hb_000000_230 Hb_000000_230 Hb_050847_050--Hb_000000_230 Hb_002471_090 Hb_002471_090 Hb_050847_050--Hb_002471_090 Hb_004781_010 Hb_004781_010 Hb_050847_050--Hb_004781_010 Hb_000510_340 Hb_000510_340 Hb_050847_050--Hb_000510_340 Hb_007257_060 Hb_007257_060 Hb_050847_050--Hb_007257_060 Hb_000002_240 Hb_000002_240 Hb_000111_180--Hb_000002_240 Hb_000318_480 Hb_000318_480 Hb_000111_180--Hb_000318_480 Hb_006588_210 Hb_006588_210 Hb_000111_180--Hb_006588_210 Hb_000260_180 Hb_000260_180 Hb_000111_180--Hb_000260_180 Hb_007441_110 Hb_007441_110 Hb_000111_180--Hb_007441_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.99722 27.9319 20.4173 12.2154 6.82947 5.52754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.9808 19.8281 10.9671 22.5822 4.54762

CAGE analysis