Hb_006538_090

Information

Type -
Description -
Location Contig6538: 78118-87221
Sequence    

Annotation

kegg
ID rcu:RCOM_0055640
description protein with unknown function
nr
ID XP_012082098.1
description PREDICTED: IST1 homolog [Jatropha curcas]
swissprot
ID Q54I39
description IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1
trembl
ID A0A067KC50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18335 PE=4 SV=1
Gene Ontology
ID GO:0048573
description ist1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52607: 73197-77120 , PASA_asmbl_52610: 80862-81339 , PASA_asmbl_52611: 84713-86710 , PASA_asmbl_52612: 86274-86484
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006538_090 0.0 - - PREDICTED: IST1 homolog [Jatropha curcas]
2 Hb_168893_020 0.0710724579 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
3 Hb_004005_020 0.0912416561 - - PREDICTED: nudix hydrolase 20, chloroplastic-like isoform X1 [Jatropha curcas]
4 Hb_000538_120 0.0918257618 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
5 Hb_001301_110 0.0921492778 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
6 Hb_015057_020 0.0921530969 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]
7 Hb_003058_120 0.0932667693 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
8 Hb_001728_040 0.093738886 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
9 Hb_000076_220 0.0938254986 - - thioredoxin domain-containing protein, putative [Ricinus communis]
10 Hb_000665_140 0.0952408015 - - PREDICTED: protein MEMO1 [Jatropha curcas]
11 Hb_005588_060 0.0957159523 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
12 Hb_001369_250 0.0983051941 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
13 Hb_000853_150 0.0985419467 - - Fumarase 1 isoform 2 [Theobroma cacao]
14 Hb_005276_040 0.0990221799 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
15 Hb_000920_200 0.0997975266 - - PREDICTED: E3 ubiquitin-protein ligase SINAT5-like isoform X1 [Jatropha curcas]
16 Hb_007894_060 0.1007865007 - - PREDICTED: ubiquitin thioesterase OTU1 [Jatropha curcas]
17 Hb_004994_210 0.1018916899 - - phosphomannomutase family protein [Populus trichocarpa]
18 Hb_002119_130 0.1021703698 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
19 Hb_000555_100 0.1023544869 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
20 Hb_006637_030 0.1027367419 - - hypothetical protein CISIN_1g017413mg [Citrus sinensis]

Gene co-expression network

sample Hb_006538_090 Hb_006538_090 Hb_168893_020 Hb_168893_020 Hb_006538_090--Hb_168893_020 Hb_004005_020 Hb_004005_020 Hb_006538_090--Hb_004005_020 Hb_000538_120 Hb_000538_120 Hb_006538_090--Hb_000538_120 Hb_001301_110 Hb_001301_110 Hb_006538_090--Hb_001301_110 Hb_015057_020 Hb_015057_020 Hb_006538_090--Hb_015057_020 Hb_003058_120 Hb_003058_120 Hb_006538_090--Hb_003058_120 Hb_000210_060 Hb_000210_060 Hb_168893_020--Hb_000210_060 Hb_000555_100 Hb_000555_100 Hb_168893_020--Hb_000555_100 Hb_001369_250 Hb_001369_250 Hb_168893_020--Hb_001369_250 Hb_002477_290 Hb_002477_290 Hb_168893_020--Hb_002477_290 Hb_005276_040 Hb_005276_040 Hb_168893_020--Hb_005276_040 Hb_000723_230 Hb_000723_230 Hb_004005_020--Hb_000723_230 Hb_006637_030 Hb_006637_030 Hb_004005_020--Hb_006637_030 Hb_004005_020--Hb_168893_020 Hb_001016_100 Hb_001016_100 Hb_004005_020--Hb_001016_100 Hb_000853_150 Hb_000853_150 Hb_004005_020--Hb_000853_150 Hb_007894_060 Hb_007894_060 Hb_000538_120--Hb_007894_060 Hb_000136_260 Hb_000136_260 Hb_000538_120--Hb_000136_260 Hb_000302_140 Hb_000302_140 Hb_000538_120--Hb_000302_140 Hb_007928_030 Hb_007928_030 Hb_000538_120--Hb_007928_030 Hb_000571_020 Hb_000571_020 Hb_000538_120--Hb_000571_020 Hb_000413_280 Hb_000413_280 Hb_000538_120--Hb_000413_280 Hb_000069_720 Hb_000069_720 Hb_001301_110--Hb_000069_720 Hb_004157_050 Hb_004157_050 Hb_001301_110--Hb_004157_050 Hb_005588_060 Hb_005588_060 Hb_001301_110--Hb_005588_060 Hb_000665_140 Hb_000665_140 Hb_001301_110--Hb_000665_140 Hb_000167_010 Hb_000167_010 Hb_001301_110--Hb_000167_010 Hb_001301_110--Hb_007894_060 Hb_032920_070 Hb_032920_070 Hb_015057_020--Hb_032920_070 Hb_015057_020--Hb_000210_060 Hb_001728_040 Hb_001728_040 Hb_015057_020--Hb_001728_040 Hb_015057_020--Hb_002477_290 Hb_015057_020--Hb_005276_040 Hb_003058_120--Hb_000853_150 Hb_003058_120--Hb_005588_060 Hb_023001_040 Hb_023001_040 Hb_003058_120--Hb_023001_040 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_003058_120--Hb_000167_010 Hb_003058_120--Hb_004157_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.29884 5.7121 11.3944 13.4238 3.2517 3.00981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.7742 14.1194 7.87576 12.981 7.26132

CAGE analysis