Hb_006538_120

Information

Type -
Description -
Location Contig6538: 104661-111039
Sequence    

Annotation

kegg
ID vvi:100268043
description 50S ribosomal protein L15, chloroplastic
nr
ID XP_012082097.1
description PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
swissprot
ID P31165
description 50S ribosomal protein L15, chloroplastic (Fragment) OS=Pisum sativum GN=RPL15 PE=2 SV=1
trembl
ID A0A067JZV6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18333 PE=3 SV=1
Gene Ontology
ID GO:0000311
description 50s ribosomal protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52614: 104668-110981
cDNA
(Sanger)
(ID:Location)		 003_D10.ab1: 104668-110673 , 004_H22.ab1: 104668-110688 , 004_K24.ab1: 104741-110791

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006538_120 0.0 - - PREDICTED: 50S ribosomal protein L15, chloroplastic [Jatropha curcas]
2 Hb_000221_140 0.0617143078 - - PREDICTED: serine--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_009775_010 0.0689110469 - - PREDICTED: uncharacterized protein LOC105633555 [Jatropha curcas]
4 Hb_005539_010 0.0710125717 - - PREDICTED: uncharacterized protein LOC105644585 [Jatropha curcas]
5 Hb_001410_070 0.0733052742 - - hypothetical protein JCGZ_20421 [Jatropha curcas]
6 Hb_005127_030 0.0746773962 - - PREDICTED: tryptophan--tRNA ligase, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_000941_100 0.085388957 - - thioredoxin-like 5 mRNA family protein [Populus trichocarpa]
8 Hb_001935_100 0.0878488602 - - structural molecule, putative [Ricinus communis]
9 Hb_000608_380 0.0883989219 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000212_440 0.0917828844 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_005731_160 0.0923614344 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_001660_120 0.0933517369 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
13 Hb_000227_170 0.09361618 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_001946_160 0.0945625998 - - putative chaperon P13.9 [Castanea sativa]
15 Hb_000920_030 0.0951601454 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
16 Hb_003728_100 0.0952691788 transcription factor TF Family: FAR1 conserved hypothetical protein [Ricinus communis]
17 Hb_012150_030 0.0974314726 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
18 Hb_005405_020 0.0995531959 - - PREDICTED: petal death protein isoform X1 [Jatropha curcas]
19 Hb_003752_070 0.1011666579 - - PREDICTED: uncharacterized protein LOC105643912 isoform X1 [Jatropha curcas]
20 Hb_002304_080 0.1032282046 - - PREDICTED: uncharacterized protein LOC105649626 [Jatropha curcas]

Gene co-expression network

sample Hb_006538_120 Hb_006538_120 Hb_000221_140 Hb_000221_140 Hb_006538_120--Hb_000221_140 Hb_009775_010 Hb_009775_010 Hb_006538_120--Hb_009775_010 Hb_005539_010 Hb_005539_010 Hb_006538_120--Hb_005539_010 Hb_001410_070 Hb_001410_070 Hb_006538_120--Hb_001410_070 Hb_005127_030 Hb_005127_030 Hb_006538_120--Hb_005127_030 Hb_000941_100 Hb_000941_100 Hb_006538_120--Hb_000941_100 Hb_001660_120 Hb_001660_120 Hb_000221_140--Hb_001660_120 Hb_000221_140--Hb_009775_010 Hb_000212_440 Hb_000212_440 Hb_000221_140--Hb_000212_440 Hb_003038_200 Hb_003038_200 Hb_000221_140--Hb_003038_200 Hb_005405_020 Hb_005405_020 Hb_000221_140--Hb_005405_020 Hb_000580_150 Hb_000580_150 Hb_009775_010--Hb_000580_150 Hb_000173_250 Hb_000173_250 Hb_009775_010--Hb_000173_250 Hb_009775_010--Hb_001410_070 Hb_009775_010--Hb_001660_120 Hb_005539_010--Hb_000212_440 Hb_005539_010--Hb_000941_100 Hb_001935_100 Hb_001935_100 Hb_005539_010--Hb_001935_100 Hb_000227_170 Hb_000227_170 Hb_005539_010--Hb_000227_170 Hb_012150_030 Hb_012150_030 Hb_005539_010--Hb_012150_030 Hb_001410_070--Hb_001935_100 Hb_000796_160 Hb_000796_160 Hb_001410_070--Hb_000796_160 Hb_000025_780 Hb_000025_780 Hb_001410_070--Hb_000025_780 Hb_001410_070--Hb_005539_010 Hb_005127_030--Hb_000221_140 Hb_007534_050 Hb_007534_050 Hb_005127_030--Hb_007534_050 Hb_005731_160 Hb_005731_160 Hb_005127_030--Hb_005731_160 Hb_005127_030--Hb_012150_030 Hb_005127_030--Hb_000212_440 Hb_003053_110 Hb_003053_110 Hb_000941_100--Hb_003053_110 Hb_048093_010 Hb_048093_010 Hb_000941_100--Hb_048093_010 Hb_001195_770 Hb_001195_770 Hb_000941_100--Hb_001195_770 Hb_000941_100--Hb_012150_030 Hb_006907_060 Hb_006907_060 Hb_000941_100--Hb_006907_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.095 27.2993 96.1112 50.8763 39.9535 56.2586
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.6785 57.4446 29.9786 33.6642 137.193

CAGE analysis