Hb_006538_180

Information

Type transcription factor
Description TF Family: C2C2-CO-like
Location Contig6538: 149934-151973
Sequence    

Annotation

kegg
ID pop:POPTR_0008s11930g
description POPTRDRAFT_419707; hypothetical protein
nr
ID XP_002311458.2
description zinc finger family protein [Populus trichocarpa]
swissprot
ID Q8LG76
description Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana GN=COL6 PE=2 SV=2
trembl
ID A9PFG3
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0008s11930g PE=2 SV=1
Gene Ontology
ID GO:0005622
description zinc finger protein constans-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006538_180 0.0 transcription factor TF Family: C2C2-CO-like zinc finger family protein [Populus trichocarpa]
2 Hb_009620_060 0.2101368087 - - PREDICTED: acetylornithine aminotransferase, mitochondrial-like [Jatropha curcas]
3 Hb_001484_080 0.2245309852 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
4 Hb_000252_180 0.2247464032 - - Glutamate--glyoxylate aminotransferase 2 [Morus notabilis]
5 Hb_000367_140 0.226100345 - - S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]
6 Hb_000184_030 0.2326938245 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
7 Hb_000017_130 0.2339185869 - - PREDICTED: mitogen-activated protein kinase homolog MMK2-like [Jatropha curcas]
8 Hb_114861_010 0.2339202733 - - STRESS ENHANCED protein 1 [Populus trichocarpa]
9 Hb_002686_060 0.2340044854 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000014_190 0.2348852667 - - Phytoene dehydrogenase, putative [Ricinus communis]
11 Hb_000189_520 0.2354703568 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
12 Hb_000699_080 0.2384016067 - - PREDICTED: rubisco accumulation factor 1, chloroplastic [Jatropha curcas]
13 Hb_000023_050 0.2390601416 - - PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
14 Hb_004218_260 0.2477002961 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
15 Hb_001133_100 0.2482835266 - - PREDICTED: oligopeptide transporter 6-like [Jatropha curcas]
16 Hb_003106_170 0.2502572012 - - Endonuclease III, putative [Ricinus communis]
17 Hb_001792_030 0.2505419251 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Jatropha curcas]
18 Hb_007044_250 0.2540458573 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000108_250 0.2542905772 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 [Jatropha curcas]
20 Hb_000012_010 0.2548529633 - - hypothetical protein JCGZ_07709 [Jatropha curcas]

Gene co-expression network

sample Hb_006538_180 Hb_006538_180 Hb_009620_060 Hb_009620_060 Hb_006538_180--Hb_009620_060 Hb_001484_080 Hb_001484_080 Hb_006538_180--Hb_001484_080 Hb_000252_180 Hb_000252_180 Hb_006538_180--Hb_000252_180 Hb_000367_140 Hb_000367_140 Hb_006538_180--Hb_000367_140 Hb_000184_030 Hb_000184_030 Hb_006538_180--Hb_000184_030 Hb_000017_130 Hb_000017_130 Hb_006538_180--Hb_000017_130 Hb_003226_190 Hb_003226_190 Hb_009620_060--Hb_003226_190 Hb_000014_190 Hb_000014_190 Hb_009620_060--Hb_000014_190 Hb_000189_520 Hb_000189_520 Hb_009620_060--Hb_000189_520 Hb_002671_130 Hb_002671_130 Hb_009620_060--Hb_002671_130 Hb_000032_400 Hb_000032_400 Hb_009620_060--Hb_000032_400 Hb_007904_040 Hb_007904_040 Hb_009620_060--Hb_007904_040 Hb_007044_250 Hb_007044_250 Hb_001484_080--Hb_007044_250 Hb_000977_270 Hb_000977_270 Hb_001484_080--Hb_000977_270 Hb_003106_170 Hb_003106_170 Hb_001484_080--Hb_003106_170 Hb_114861_010 Hb_114861_010 Hb_001484_080--Hb_114861_010 Hb_001792_030 Hb_001792_030 Hb_001484_080--Hb_001792_030 Hb_003752_060 Hb_003752_060 Hb_001484_080--Hb_003752_060 Hb_009393_140 Hb_009393_140 Hb_000252_180--Hb_009393_140 Hb_000679_320 Hb_000679_320 Hb_000252_180--Hb_000679_320 Hb_006915_010 Hb_006915_010 Hb_000252_180--Hb_006915_010 Hb_000638_100 Hb_000638_100 Hb_000252_180--Hb_000638_100 Hb_001691_180 Hb_001691_180 Hb_000252_180--Hb_001691_180 Hb_000359_160 Hb_000359_160 Hb_000252_180--Hb_000359_160 Hb_000699_080 Hb_000699_080 Hb_000367_140--Hb_000699_080 Hb_000360_010 Hb_000360_010 Hb_000367_140--Hb_000360_010 Hb_000359_070 Hb_000359_070 Hb_000367_140--Hb_000359_070 Hb_003336_020 Hb_003336_020 Hb_000367_140--Hb_003336_020 Hb_003905_030 Hb_003905_030 Hb_000367_140--Hb_003905_030 Hb_156850_020 Hb_156850_020 Hb_000367_140--Hb_156850_020 Hb_009615_180 Hb_009615_180 Hb_000184_030--Hb_009615_180 Hb_001294_030 Hb_001294_030 Hb_000184_030--Hb_001294_030 Hb_000062_520 Hb_000062_520 Hb_000184_030--Hb_000062_520 Hb_000184_030--Hb_000189_520 Hb_000184_030--Hb_001484_080 Hb_000184_030--Hb_114861_010 Hb_000017_130--Hb_114861_010 Hb_000110_230 Hb_000110_230 Hb_000017_130--Hb_000110_230 Hb_002304_180 Hb_002304_180 Hb_000017_130--Hb_002304_180 Hb_000012_010 Hb_000012_010 Hb_000017_130--Hb_000012_010 Hb_000017_130--Hb_000189_520 Hb_000017_130--Hb_001484_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0773543 0.304139 0.0587296 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.208315 0.109271 0.0690279 0.188424 1.23079

CAGE analysis