Hb_006541_010

Information

Type -
Description -
Location Contig6541: 9483-29889
Sequence    

Annotation

kegg
ID tcc:TCM_019883
description 5\'-3\' exonuclease family protein isoform 1
nr
ID XP_012076105.1
description PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
swissprot
ID P52026
description DNA polymerase I OS=Geobacillus stearothermophilus GN=polA PE=1 SV=2
trembl
ID A0A061EJA7
description 5\'-3\' exonuclease family protein isoform 1 OS=Theobroma cacao GN=TCM_019883 PE=4 SV=1
Gene Ontology
ID GO:0003677
description 5\ -3\ exonuclease family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52629: 9617-10565 , PASA_asmbl_52630: 10608-29870
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006541_010 0.0 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
2 Hb_033153_060 0.0597047557 - - Transcription elongation factor, putative [Ricinus communis]
3 Hb_001616_040 0.0604225043 - - PREDICTED: uncharacterized protein LOC105644362 [Jatropha curcas]
4 Hb_004459_040 0.0637802448 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
5 Hb_007576_170 0.065426388 - - conserved hypothetical protein [Ricinus communis]
6 Hb_011644_030 0.0678615382 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
7 Hb_007441_040 0.0692023681 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
8 Hb_004055_070 0.0742892617 - - PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]
9 Hb_017491_060 0.0744496608 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
10 Hb_002676_090 0.0757391609 - - PREDICTED: protein TIC 22-like, chloroplastic [Jatropha curcas]
11 Hb_000680_140 0.0772123067 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
12 Hb_000102_020 0.0775781102 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
13 Hb_006816_530 0.0777224996 - - 60S ribosomal protein L18, putative [Ricinus communis]
14 Hb_005181_030 0.078896991 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
15 Hb_004157_030 0.0789120947 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
16 Hb_002016_120 0.0798819786 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
17 Hb_002798_020 0.0807766025 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
18 Hb_001505_020 0.0814677346 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
19 Hb_086639_090 0.082103167 - - 60S ribosomal protein L7a, putative [Ricinus communis]
20 Hb_002830_020 0.0823573124 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_006541_010 Hb_006541_010 Hb_033153_060 Hb_033153_060 Hb_006541_010--Hb_033153_060 Hb_001616_040 Hb_001616_040 Hb_006541_010--Hb_001616_040 Hb_004459_040 Hb_004459_040 Hb_006541_010--Hb_004459_040 Hb_007576_170 Hb_007576_170 Hb_006541_010--Hb_007576_170 Hb_011644_030 Hb_011644_030 Hb_006541_010--Hb_011644_030 Hb_007441_040 Hb_007441_040 Hb_006541_010--Hb_007441_040 Hb_033153_060--Hb_004459_040 Hb_033153_060--Hb_007576_170 Hb_000042_200 Hb_000042_200 Hb_033153_060--Hb_000042_200 Hb_007065_010 Hb_007065_010 Hb_033153_060--Hb_007065_010 Hb_000789_230 Hb_000789_230 Hb_033153_060--Hb_000789_230 Hb_000920_110 Hb_000920_110 Hb_001616_040--Hb_000920_110 Hb_001016_030 Hb_001016_030 Hb_001616_040--Hb_001016_030 Hb_000030_290 Hb_000030_290 Hb_001616_040--Hb_000030_290 Hb_010175_040 Hb_010175_040 Hb_001616_040--Hb_010175_040 Hb_003226_100 Hb_003226_100 Hb_001616_040--Hb_003226_100 Hb_004459_040--Hb_007576_170 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_000224_140 Hb_000224_140 Hb_004459_040--Hb_000224_140 Hb_000431_070 Hb_000431_070 Hb_007576_170--Hb_000431_070 Hb_002798_020 Hb_002798_020 Hb_007576_170--Hb_002798_020 Hb_017225_020 Hb_017225_020 Hb_007576_170--Hb_017225_020 Hb_004567_120 Hb_004567_120 Hb_011644_030--Hb_004567_120 Hb_003994_040 Hb_003994_040 Hb_011644_030--Hb_003994_040 Hb_026048_070 Hb_026048_070 Hb_011644_030--Hb_026048_070 Hb_000136_170 Hb_000136_170 Hb_011644_030--Hb_000136_170 Hb_000364_030 Hb_000364_030 Hb_011644_030--Hb_000364_030 Hb_000102_020 Hb_000102_020 Hb_007441_040--Hb_000102_020 Hb_009182_010 Hb_009182_010 Hb_007441_040--Hb_009182_010 Hb_001814_050 Hb_001814_050 Hb_007441_040--Hb_001814_050 Hb_007012_060 Hb_007012_060 Hb_007441_040--Hb_007012_060 Hb_000656_170 Hb_000656_170 Hb_007441_040--Hb_000656_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.54945 3.08308 5.29558 7.52019 4.7944 10.2403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4957 22.9262 10.8254 6.51712 5.821

CAGE analysis