Hb_006541_020

Information

Type -
Description -
Location Contig6541: 31900-34993
Sequence    

Annotation

kegg
ID mtr:MTR_040s0033
description Signal recognition particle 14 kDa protein
nr
ID AFK37103.1
description unknown [Lotus japonicus]
swissprot
ID O04421
description Signal recognition particle 14 kDa protein OS=Arabidopsis thaliana GN=SRP14 PE=2 SV=2
trembl
ID I3SA11
description Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
Gene Ontology
ID GO:0005786
description signal recognition particle 14 kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52631: 32001-35331 , PASA_asmbl_52632: 33056-33289
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006541_020 0.0 - - unknown [Lotus japonicus]
2 Hb_000025_240 0.0835961453 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
3 Hb_008748_020 0.0983946921 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
4 Hb_006718_010 0.099875494 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
5 Hb_007520_060 0.1066767882 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
6 Hb_000367_210 0.111714463 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
7 Hb_000367_030 0.1117947027 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
8 Hb_005914_200 0.122558963 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
9 Hb_014834_030 0.1277045558 - - -
10 Hb_004754_070 0.1308957002 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
11 Hb_000419_130 0.1331671889 - - PREDICTED: uncharacterized protein LOC105650901 [Jatropha curcas]
12 Hb_001935_150 0.1355905458 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
13 Hb_011377_020 0.1372949337 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
14 Hb_009659_020 0.1373528544 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
15 Hb_187083_010 0.1381686515 - - PREDICTED: uncharacterized protein LOC105643971 [Jatropha curcas]
16 Hb_000599_280 0.1385437584 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
17 Hb_003777_210 0.1388201443 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
18 Hb_001780_050 0.1393602128 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
19 Hb_001769_100 0.1399193487 - - hypothetical protein POPTR_0014s01620g [Populus trichocarpa]
20 Hb_002025_300 0.1405740725 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]

Gene co-expression network

sample Hb_006541_020 Hb_006541_020 Hb_000025_240 Hb_000025_240 Hb_006541_020--Hb_000025_240 Hb_008748_020 Hb_008748_020 Hb_006541_020--Hb_008748_020 Hb_006718_010 Hb_006718_010 Hb_006541_020--Hb_006718_010 Hb_007520_060 Hb_007520_060 Hb_006541_020--Hb_007520_060 Hb_000367_210 Hb_000367_210 Hb_006541_020--Hb_000367_210 Hb_000367_030 Hb_000367_030 Hb_006541_020--Hb_000367_030 Hb_000025_240--Hb_008748_020 Hb_005914_200 Hb_005914_200 Hb_000025_240--Hb_005914_200 Hb_000025_240--Hb_006718_010 Hb_014834_030 Hb_014834_030 Hb_000025_240--Hb_014834_030 Hb_002025_300 Hb_002025_300 Hb_000025_240--Hb_002025_300 Hb_008748_020--Hb_005914_200 Hb_004735_050 Hb_004735_050 Hb_008748_020--Hb_004735_050 Hb_004754_070 Hb_004754_070 Hb_008748_020--Hb_004754_070 Hb_004007_180 Hb_004007_180 Hb_008748_020--Hb_004007_180 Hb_006718_010--Hb_002025_300 Hb_006718_010--Hb_000367_030 Hb_004223_260 Hb_004223_260 Hb_006718_010--Hb_004223_260 Hb_006718_010--Hb_007520_060 Hb_009659_020 Hb_009659_020 Hb_007520_060--Hb_009659_020 Hb_030565_040 Hb_030565_040 Hb_007520_060--Hb_030565_040 Hb_007520_060--Hb_000367_210 Hb_000419_130 Hb_000419_130 Hb_007520_060--Hb_000419_130 Hb_187083_010 Hb_187083_010 Hb_000367_210--Hb_187083_010 Hb_000163_130 Hb_000163_130 Hb_000367_210--Hb_000163_130 Hb_001780_050 Hb_001780_050 Hb_000367_210--Hb_001780_050 Hb_003561_030 Hb_003561_030 Hb_000367_210--Hb_003561_030 Hb_000820_130 Hb_000820_130 Hb_000367_210--Hb_000820_130 Hb_000367_210--Hb_005914_200 Hb_002843_210 Hb_002843_210 Hb_000367_030--Hb_002843_210 Hb_005245_070 Hb_005245_070 Hb_000367_030--Hb_005245_070 Hb_000367_030--Hb_000025_240 Hb_000367_030--Hb_007520_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.00779 0.918855 4.0896 19.5267 3.71572 27.1602
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.3898 79.9698 20.4382 15.3895 6.48731

CAGE analysis