Hb_006541_030

Information

Type -
Description -
Location Contig6541: 36963-42780
Sequence    

Annotation

kegg
ID rcu:RCOM_0547610
description hypothetical protein
nr
ID XP_012065076.1
description PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LI55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05727 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52633: 37006-42808
cDNA
(Sanger)
(ID:Location)		 008_B20r.ab1: 43064-45936

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006541_030 0.0 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
2 Hb_007380_070 0.0569123458 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
3 Hb_005539_350 0.0623465493 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000243_030 0.0644386603 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
5 Hb_000398_180 0.0661645475 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
6 Hb_000529_190 0.0668013419 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
7 Hb_002874_190 0.0682549679 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
8 Hb_000840_030 0.0688629383 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
9 Hb_063716_050 0.0690825606 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
10 Hb_118707_030 0.0705313806 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
11 Hb_003929_160 0.0719179486 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
12 Hb_006117_070 0.0719255746 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
13 Hb_009838_080 0.0720905278 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
14 Hb_002214_040 0.0722319161 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
15 Hb_011316_040 0.072263075 - - peptidase, putative [Ricinus communis]
16 Hb_000103_560 0.0723526964 - - ADP-ribosylation factor, putative [Ricinus communis]
17 Hb_010504_020 0.0725813475 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
18 Hb_001604_080 0.0728910556 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
19 Hb_153112_020 0.0747425932 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
20 Hb_006332_020 0.0767998278 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]

Gene co-expression network

sample Hb_006541_030 Hb_006541_030 Hb_007380_070 Hb_007380_070 Hb_006541_030--Hb_007380_070 Hb_005539_350 Hb_005539_350 Hb_006541_030--Hb_005539_350 Hb_000243_030 Hb_000243_030 Hb_006541_030--Hb_000243_030 Hb_000398_180 Hb_000398_180 Hb_006541_030--Hb_000398_180 Hb_000529_190 Hb_000529_190 Hb_006541_030--Hb_000529_190 Hb_002874_190 Hb_002874_190 Hb_006541_030--Hb_002874_190 Hb_001671_020 Hb_001671_020 Hb_007380_070--Hb_001671_020 Hb_007380_070--Hb_000398_180 Hb_003929_160 Hb_003929_160 Hb_007380_070--Hb_003929_160 Hb_007380_070--Hb_005539_350 Hb_028872_140 Hb_028872_140 Hb_007380_070--Hb_028872_140 Hb_001269_680 Hb_001269_680 Hb_005539_350--Hb_001269_680 Hb_005539_350--Hb_002874_190 Hb_002007_060 Hb_002007_060 Hb_005539_350--Hb_002007_060 Hb_000840_030 Hb_000840_030 Hb_005539_350--Hb_000840_030 Hb_000056_200 Hb_000056_200 Hb_000243_030--Hb_000056_200 Hb_063716_050 Hb_063716_050 Hb_000243_030--Hb_063716_050 Hb_000243_030--Hb_000398_180 Hb_002226_070 Hb_002226_070 Hb_000243_030--Hb_002226_070 Hb_004440_090 Hb_004440_090 Hb_000243_030--Hb_004440_090 Hb_000398_180--Hb_028872_140 Hb_001377_290 Hb_001377_290 Hb_000398_180--Hb_001377_290 Hb_004195_160 Hb_004195_160 Hb_000398_180--Hb_004195_160 Hb_011689_080 Hb_011689_080 Hb_000398_180--Hb_011689_080 Hb_006332_020 Hb_006332_020 Hb_000398_180--Hb_006332_020 Hb_002214_040 Hb_002214_040 Hb_000529_190--Hb_002214_040 Hb_000529_190--Hb_063716_050 Hb_000103_560 Hb_000103_560 Hb_000529_190--Hb_000103_560 Hb_001789_070 Hb_001789_070 Hb_000529_190--Hb_001789_070 Hb_001604_080 Hb_001604_080 Hb_000529_190--Hb_001604_080 Hb_000832_140 Hb_000832_140 Hb_000529_190--Hb_000832_140 Hb_003055_120 Hb_003055_120 Hb_002874_190--Hb_003055_120 Hb_165132_010 Hb_165132_010 Hb_002874_190--Hb_165132_010 Hb_003687_110 Hb_003687_110 Hb_002874_190--Hb_003687_110 Hb_002874_190--Hb_000840_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.6452 17.9502 20.1426 24.5467 42.852 63.7318
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.4557 73.1365 65.2563 20.7953 23.8168

CAGE analysis