Hb_006541_040

Information

Type -
Description -
Location Contig6541: 42935-53836
Sequence    

Annotation

kegg
ID cit:102620278
description diphthamide biosynthesis protein 2-like
nr
ID XP_012065078.1
description PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
swissprot
ID Q10206
description Diphthamide biosynthesis protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dph2 PE=3 SV=1
trembl
ID A0A067L745
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05728 PE=4 SV=1
Gene Ontology
ID GO:0017183
description diphthamide biosynthesis protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52634: 43064-45936 , PASA_asmbl_52635: 50799-53514 , PASA_asmbl_52636: 51858-53374
cDNA
(Sanger)
(ID:Location)		 008_B20.ab1: 43064-45936 , 042_K23.ab1: 50799-51283

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006541_040 0.0 - - PREDICTED: diphthamide biosynthesis protein 2 [Jatropha curcas]
2 Hb_050912_010 0.0952147668 - - PREDICTED: amidase 1-like isoform X2 [Jatropha curcas]
3 Hb_001014_110 0.1095481903 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
4 Hb_054745_010 0.1143865751 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004157_100 0.1193528366 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
6 Hb_000676_080 0.127800852 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
7 Hb_005015_060 0.128288875 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
8 Hb_120982_010 0.1284934322 - - hypothetical protein CICLE_v10003116mg, partial [Citrus clementina]
9 Hb_134429_010 0.1287340706 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001191_110 0.1292229563 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
11 Hb_005527_020 0.1399589319 - - PREDICTED: uncharacterized protein LOC105643027 [Jatropha curcas]
12 Hb_000696_010 0.1440138873 - - RING-H2 finger protein ATL4M, putative [Ricinus communis]
13 Hb_000107_230 0.1448779113 - - unknown [Medicago truncatula]
14 Hb_000787_160 0.1460117924 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
15 Hb_002122_010 0.1460203699 - - -
16 Hb_000120_550 0.1465575491 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
17 Hb_161994_030 0.14703604 - - unnamed protein product [Vitis vinifera]
18 Hb_002400_330 0.147103366 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
19 Hb_001829_040 0.1472322784 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
20 Hb_006810_030 0.1478232958 - - Uncharacterized protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_006541_040 Hb_006541_040 Hb_050912_010 Hb_050912_010 Hb_006541_040--Hb_050912_010 Hb_001014_110 Hb_001014_110 Hb_006541_040--Hb_001014_110 Hb_054745_010 Hb_054745_010 Hb_006541_040--Hb_054745_010 Hb_004157_100 Hb_004157_100 Hb_006541_040--Hb_004157_100 Hb_000676_080 Hb_000676_080 Hb_006541_040--Hb_000676_080 Hb_005015_060 Hb_005015_060 Hb_006541_040--Hb_005015_060 Hb_134429_010 Hb_134429_010 Hb_050912_010--Hb_134429_010 Hb_002400_330 Hb_002400_330 Hb_050912_010--Hb_002400_330 Hb_050912_010--Hb_005015_060 Hb_161994_030 Hb_161994_030 Hb_050912_010--Hb_161994_030 Hb_000056_130 Hb_000056_130 Hb_050912_010--Hb_000056_130 Hb_005527_020 Hb_005527_020 Hb_001014_110--Hb_005527_020 Hb_001014_110--Hb_004157_100 Hb_000004_020 Hb_000004_020 Hb_001014_110--Hb_000004_020 Hb_001014_110--Hb_000676_080 Hb_001014_110--Hb_054745_010 Hb_054745_010--Hb_004157_100 Hb_054745_010--Hb_000676_080 Hb_000107_230 Hb_000107_230 Hb_054745_010--Hb_000107_230 Hb_006153_070 Hb_006153_070 Hb_054745_010--Hb_006153_070 Hb_000594_050 Hb_000594_050 Hb_054745_010--Hb_000594_050 Hb_002205_210 Hb_002205_210 Hb_054745_010--Hb_002205_210 Hb_004157_100--Hb_000107_230 Hb_169631_010 Hb_169631_010 Hb_004157_100--Hb_169631_010 Hb_004157_100--Hb_000676_080 Hb_004157_100--Hb_000004_020 Hb_000022_020 Hb_000022_020 Hb_004157_100--Hb_000022_020 Hb_000676_080--Hb_005527_020 Hb_001250_060 Hb_001250_060 Hb_000676_080--Hb_001250_060 Hb_002271_020 Hb_002271_020 Hb_000676_080--Hb_002271_020 Hb_000453_160 Hb_000453_160 Hb_000676_080--Hb_000453_160 Hb_000787_160 Hb_000787_160 Hb_005015_060--Hb_000787_160 Hb_002883_030 Hb_002883_030 Hb_005015_060--Hb_002883_030 Hb_015099_030 Hb_015099_030 Hb_005015_060--Hb_015099_030 Hb_001662_100 Hb_001662_100 Hb_005015_060--Hb_001662_100 Hb_001856_180 Hb_001856_180 Hb_005015_060--Hb_001856_180 Hb_000345_160 Hb_000345_160 Hb_005015_060--Hb_000345_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.176873 0.151834 0.386439 0.531363 0.170549 0.643579
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.173656 0.273131 0.0831632 0.312074 0.277107

CAGE analysis