Hb_006551_010

Information

Type -
Description -
Location Contig6551: 6688-7995
Sequence    

Annotation

kegg
ID rcu:RCOM_0855370
description electron transporter, putative
nr
ID XP_002517496.1
description electron transporter, putative [Ricinus communis]
swissprot
ID Q9LH89
description Uncharacterized protein At3g28850 OS=Arabidopsis thaliana GN=At3g28850 PE=3 SV=1
trembl
ID B9RUQ1
description Electron transporter, putative OS=Ricinus communis GN=RCOM_0855370 PE=4 SV=1
Gene Ontology
ID GO:0005623
description glutaredoxin family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52660: 6951-7202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006551_010 0.0 - - electron transporter, putative [Ricinus communis]
2 Hb_000258_430 0.0928034816 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
3 Hb_000313_380 0.1035865746 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001981_090 0.1069318794 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
5 Hb_000805_090 0.1107990523 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
6 Hb_001140_200 0.1114648726 - - PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
7 Hb_011174_070 0.111781254 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
8 Hb_000387_080 0.1132256425 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
9 Hb_003747_240 0.1135255521 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
10 Hb_006602_020 0.1135498119 - - unknown [Medicago truncatula]
11 Hb_000025_480 0.1141501389 transcription factor TF Family: HB PREDICTED: homeobox protein 10 isoform X1 [Jatropha curcas]
12 Hb_000173_170 0.1185311779 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
13 Hb_003404_030 0.1187696638 - - PREDICTED: monogalactosyldiacylglycerol synthase 2, chloroplastic-like isoform X1 [Jatropha curcas]
14 Hb_002357_040 0.1189291349 - - latex-abundant protein [Hevea brasiliensis]
15 Hb_000809_040 0.1211723111 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
16 Hb_002903_070 0.1217825488 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
17 Hb_001047_020 0.1227127668 - - -
18 Hb_000124_020 0.1227741849 - - PREDICTED: uncharacterized protein LOC105636589 [Jatropha curcas]
19 Hb_010174_120 0.1228602168 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
20 Hb_003057_120 0.1252564429 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_006551_010 Hb_006551_010 Hb_000258_430 Hb_000258_430 Hb_006551_010--Hb_000258_430 Hb_000313_380 Hb_000313_380 Hb_006551_010--Hb_000313_380 Hb_001981_090 Hb_001981_090 Hb_006551_010--Hb_001981_090 Hb_000805_090 Hb_000805_090 Hb_006551_010--Hb_000805_090 Hb_001140_200 Hb_001140_200 Hb_006551_010--Hb_001140_200 Hb_011174_070 Hb_011174_070 Hb_006551_010--Hb_011174_070 Hb_002450_050 Hb_002450_050 Hb_000258_430--Hb_002450_050 Hb_001017_090 Hb_001017_090 Hb_000258_430--Hb_001017_090 Hb_000028_470 Hb_000028_470 Hb_000258_430--Hb_000028_470 Hb_010174_130 Hb_010174_130 Hb_000258_430--Hb_010174_130 Hb_003404_030 Hb_003404_030 Hb_000258_430--Hb_003404_030 Hb_000809_040 Hb_000809_040 Hb_000313_380--Hb_000809_040 Hb_001366_230 Hb_001366_230 Hb_000313_380--Hb_001366_230 Hb_001366_220 Hb_001366_220 Hb_000313_380--Hb_001366_220 Hb_002662_100 Hb_002662_100 Hb_000313_380--Hb_002662_100 Hb_009026_050 Hb_009026_050 Hb_000313_380--Hb_009026_050 Hb_021068_050 Hb_021068_050 Hb_000313_380--Hb_021068_050 Hb_005357_150 Hb_005357_150 Hb_001981_090--Hb_005357_150 Hb_001981_090--Hb_001366_220 Hb_001981_090--Hb_000809_040 Hb_000983_100 Hb_000983_100 Hb_001981_090--Hb_000983_100 Hb_002357_040 Hb_002357_040 Hb_001981_090--Hb_002357_040 Hb_001981_090--Hb_000805_090 Hb_003638_030 Hb_003638_030 Hb_000805_090--Hb_003638_030 Hb_000805_090--Hb_002357_040 Hb_000805_090--Hb_000809_040 Hb_000805_090--Hb_011174_070 Hb_003861_080 Hb_003861_080 Hb_000805_090--Hb_003861_080 Hb_057183_040 Hb_057183_040 Hb_001140_200--Hb_057183_040 Hb_001673_120 Hb_001673_120 Hb_001140_200--Hb_001673_120 Hb_001823_100 Hb_001823_100 Hb_001140_200--Hb_001823_100 Hb_001936_050 Hb_001936_050 Hb_001140_200--Hb_001936_050 Hb_001981_070 Hb_001981_070 Hb_001140_200--Hb_001981_070 Hb_001140_200--Hb_000028_470 Hb_003057_120 Hb_003057_120 Hb_011174_070--Hb_003057_120 Hb_000427_030 Hb_000427_030 Hb_011174_070--Hb_000427_030 Hb_000387_080 Hb_000387_080 Hb_011174_070--Hb_000387_080 Hb_000057_060 Hb_000057_060 Hb_011174_070--Hb_000057_060 Hb_000025_480 Hb_000025_480 Hb_011174_070--Hb_000025_480
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0449 5.83897 1.97215 4.67421 18.3404 23.8414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
21.17 16.2503 34.4469 3.23841 0.53911

CAGE analysis