Hb_006555_040

Information

Type -
Description -
Location Contig6555: 50423-57931
Sequence    

Annotation

kegg
ID rcu:RCOM_1298920
description hypothetical protein
nr
ID XP_012078846.1
description PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
swissprot
ID P37574
description Uncharacterized protein YacP OS=Bacillus subtilis (strain 168) GN=yacP PE=4 SV=1
trembl
ID A0A067K875
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13371 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52686: 50722-54109 , PASA_asmbl_52689: 55367-55587 , PASA_asmbl_52690: 54630-56683
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006555_040 0.0 - - PREDICTED: uncharacterized protein LOC105639405 [Jatropha curcas]
2 Hb_000140_440 0.0549236776 - - PREDICTED: probable hydroxyacylglutathione hydrolase 2, chloroplast [Jatropha curcas]
3 Hb_001930_030 0.0772657968 - - PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]
4 Hb_004994_080 0.0797155604 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_007263_010 0.084297904 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
6 Hb_002255_040 0.0914931129 - - PREDICTED: biotin synthase [Jatropha curcas]
7 Hb_011386_050 0.0965682574 - - PREDICTED: malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Jatropha curcas]
8 Hb_007451_040 0.0979354004 - - PREDICTED: uncharacterized protein LOC105643411 [Jatropha curcas]
9 Hb_000211_040 0.0984594977 - - PREDICTED: uncharacterized protein LOC105629236 [Jatropha curcas]
10 Hb_005731_110 0.10186181 - - PREDICTED: uncharacterized protein LOC105108367 isoform X1 [Populus euphratica]
11 Hb_000012_270 0.1019170007 - - NADH-plastoquinone oxidoreductase, putative [Ricinus communis]
12 Hb_155025_010 0.1035576447 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
13 Hb_002027_320 0.107333526 - - PREDICTED: RNA-binding protein BRN1 [Jatropha curcas]
14 Hb_015292_040 0.1073563549 - - PREDICTED: myb-like protein X [Jatropha curcas]
15 Hb_000959_220 0.1092997848 - - zinc finger protein, putative [Ricinus communis]
16 Hb_000085_190 0.1099663527 - - FtsZ1 protein [Manihot esculenta]
17 Hb_000284_130 0.1111666069 - - sodium-bile acid cotransporter, putative [Ricinus communis]
18 Hb_006120_040 0.1127414125 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]
19 Hb_001322_020 0.1156194925 - - PREDICTED: polycomb group protein VERNALIZATION 2-like isoform X2 [Populus euphratica]
20 Hb_066967_020 0.1161986577 - - RAB6-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006555_040 Hb_006555_040 Hb_000140_440 Hb_000140_440 Hb_006555_040--Hb_000140_440 Hb_001930_030 Hb_001930_030 Hb_006555_040--Hb_001930_030 Hb_004994_080 Hb_004994_080 Hb_006555_040--Hb_004994_080 Hb_007263_010 Hb_007263_010 Hb_006555_040--Hb_007263_010 Hb_002255_040 Hb_002255_040 Hb_006555_040--Hb_002255_040 Hb_011386_050 Hb_011386_050 Hb_006555_040--Hb_011386_050 Hb_000140_440--Hb_004994_080 Hb_155025_010 Hb_155025_010 Hb_000140_440--Hb_155025_010 Hb_007451_040 Hb_007451_040 Hb_000140_440--Hb_007451_040 Hb_002218_020 Hb_002218_020 Hb_000140_440--Hb_002218_020 Hb_000181_060 Hb_000181_060 Hb_000140_440--Hb_000181_060 Hb_005731_110 Hb_005731_110 Hb_001930_030--Hb_005731_110 Hb_000445_070 Hb_000445_070 Hb_001930_030--Hb_000445_070 Hb_015292_040 Hb_015292_040 Hb_001930_030--Hb_015292_040 Hb_001930_030--Hb_004994_080 Hb_000436_100 Hb_000436_100 Hb_001930_030--Hb_000436_100 Hb_004994_080--Hb_007263_010 Hb_000364_100 Hb_000364_100 Hb_004994_080--Hb_000364_100 Hb_004994_080--Hb_000181_060 Hb_004994_080--Hb_011386_050 Hb_005162_110 Hb_005162_110 Hb_004994_080--Hb_005162_110 Hb_007263_010--Hb_007451_040 Hb_002027_320 Hb_002027_320 Hb_007263_010--Hb_002027_320 Hb_000392_450 Hb_000392_450 Hb_007263_010--Hb_000392_450 Hb_007263_010--Hb_011386_050 Hb_029142_030 Hb_029142_030 Hb_002255_040--Hb_029142_030 Hb_011249_030 Hb_011249_030 Hb_002255_040--Hb_011249_030 Hb_028207_020 Hb_028207_020 Hb_002255_040--Hb_028207_020 Hb_003581_210 Hb_003581_210 Hb_002255_040--Hb_003581_210 Hb_000424_020 Hb_000424_020 Hb_002255_040--Hb_000424_020 Hb_000340_130 Hb_000340_130 Hb_011386_050--Hb_000340_130 Hb_011386_050--Hb_002027_320 Hb_011386_050--Hb_000364_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.59284 5.0418 23.9176 5.52627 5.61894 4.27447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.03645 3.80469 2.99339 2.88315 8.6857

CAGE analysis