Hb_006557_010

Information

Type -
Description -
Location Contig6557: 29025-30264
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006557_010 0.0 - - -
2 Hb_004657_010 0.0780376388 - - PREDICTED: uncharacterized protein LOC105639764 [Jatropha curcas]
3 Hb_005496_060 0.1317547719 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 38-like [Jatropha curcas]
4 Hb_000329_620 0.1371849201 - - PREDICTED: uncharacterized protein LOC105643215 [Jatropha curcas]
5 Hb_004449_010 0.1586705289 - - lipase [Ricinus communis]
6 Hb_002835_190 0.1589544788 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
7 Hb_000352_150 0.1642468363 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
8 Hb_043637_010 0.1646532995 transcription factor TF Family: zf-HD hypothetical protein POPTR_0015s05220g, partial [Populus trichocarpa]
9 Hb_001252_160 0.1658592192 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
10 Hb_002875_090 0.1706355079 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002701_130 0.1708627078 transcription factor TF Family: MYB Myb domain protein 121 [Theobroma cacao]
12 Hb_170116_010 0.1724835467 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
13 Hb_000088_060 0.1746463946 - - -
14 Hb_000340_480 0.1805628537 - - -
15 Hb_003304_080 0.1810283441 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
16 Hb_001635_220 0.1827652019 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
17 Hb_003913_100 0.182789815 - - copper amine oxidase, putative [Ricinus communis]
18 Hb_000329_610 0.1838877592 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001628_110 0.184959602 - - PREDICTED: synaptotagmin-2 [Jatropha curcas]
20 Hb_004092_010 0.1871708983 - - transferase, transferring glycosyl groups, putative [Ricinus communis]

Gene co-expression network

sample Hb_006557_010 Hb_006557_010 Hb_004657_010 Hb_004657_010 Hb_006557_010--Hb_004657_010 Hb_005496_060 Hb_005496_060 Hb_006557_010--Hb_005496_060 Hb_000329_620 Hb_000329_620 Hb_006557_010--Hb_000329_620 Hb_004449_010 Hb_004449_010 Hb_006557_010--Hb_004449_010 Hb_002835_190 Hb_002835_190 Hb_006557_010--Hb_002835_190 Hb_000352_150 Hb_000352_150 Hb_006557_010--Hb_000352_150 Hb_004657_010--Hb_004449_010 Hb_004657_010--Hb_000329_620 Hb_004657_010--Hb_000352_150 Hb_004657_010--Hb_005496_060 Hb_004657_010--Hb_002835_190 Hb_005496_060--Hb_002835_190 Hb_000340_480 Hb_000340_480 Hb_005496_060--Hb_000340_480 Hb_002374_340 Hb_002374_340 Hb_005496_060--Hb_002374_340 Hb_000753_260 Hb_000753_260 Hb_005496_060--Hb_000753_260 Hb_007158_030 Hb_007158_030 Hb_000329_620--Hb_007158_030 Hb_029464_010 Hb_029464_010 Hb_000329_620--Hb_029464_010 Hb_009193_130 Hb_009193_130 Hb_000329_620--Hb_009193_130 Hb_000329_620--Hb_002835_190 Hb_005271_030 Hb_005271_030 Hb_000329_620--Hb_005271_030 Hb_001252_160 Hb_001252_160 Hb_000329_620--Hb_001252_160 Hb_178345_010 Hb_178345_010 Hb_004449_010--Hb_178345_010 Hb_004449_010--Hb_000340_480 Hb_000977_140 Hb_000977_140 Hb_004449_010--Hb_000977_140 Hb_012395_100 Hb_012395_100 Hb_004449_010--Hb_012395_100 Hb_003913_100 Hb_003913_100 Hb_002835_190--Hb_003913_100 Hb_002835_190--Hb_001252_160 Hb_002942_030 Hb_002942_030 Hb_002835_190--Hb_002942_030 Hb_013479_020 Hb_013479_020 Hb_002835_190--Hb_013479_020 Hb_002875_090 Hb_002875_090 Hb_000352_150--Hb_002875_090 Hb_001980_020 Hb_001980_020 Hb_000352_150--Hb_001980_020 Hb_170116_010 Hb_170116_010 Hb_000352_150--Hb_170116_010 Hb_003636_090 Hb_003636_090 Hb_000352_150--Hb_003636_090 Hb_001454_390 Hb_001454_390 Hb_000352_150--Hb_001454_390 Hb_003253_010 Hb_003253_010 Hb_000352_150--Hb_003253_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
102.259 0.479755 0 0.030619 145.395 70.8701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.9863 51.7961 17.6362 2.23834 0

CAGE analysis