Hb_006569_030

Information

Type -
Description -
Location Contig6569: 27601-38785
Sequence    

Annotation

kegg
ID rcu:RCOM_0026140
description phosphoglucomutase, putative (EC:5.4.2.8)
nr
ID XP_012093260.1
description PREDICTED: uncharacterized protein LOC105650907 isoform X1 [Jatropha curcas]
swissprot
ID Q88C93
description Phosphomannomutase/phosphoglucomutase OS=Pseudomonas putida (strain KT2440) GN=algC PE=3 SV=1
trembl
ID A0A067L7I5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20047 PE=4 SV=1
Gene Ontology
ID GO:0004615
description probable phosphoribomutase isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52763: 28259-29474 , PASA_asmbl_52764: 29504-38299
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006569_030 0.0 - - PREDICTED: uncharacterized protein LOC105650907 isoform X1 [Jatropha curcas]
2 Hb_002217_030 0.081573296 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
3 Hb_009079_030 0.0902273574 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
4 Hb_001473_180 0.0933422899 - - glutathione reductase [Hevea brasiliensis]
5 Hb_002681_090 0.0948588779 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
6 Hb_001235_140 0.0949347027 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
7 Hb_004787_080 0.0961363916 - - PREDICTED: microtubule-associated protein RP/EB family member 1B [Jatropha curcas]
8 Hb_001232_010 0.0969032511 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
9 Hb_000130_160 0.09714668 - - PREDICTED: protein DJ-1 homolog B-like [Jatropha curcas]
10 Hb_000032_280 0.0984541219 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
11 Hb_133702_030 0.0987193821 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
12 Hb_005147_030 0.098988702 - - hypothetical protein POPTR_0004s23390g [Populus trichocarpa]
13 Hb_000329_060 0.0992680626 - - chloroplast 5-enolpyruvylshikimate 3-phosphate synthase [Hevea brasiliensis]
14 Hb_002471_290 0.1011294178 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
15 Hb_012114_080 0.1013745118 - - gamma-glutamylcysteine synthetase [Hevea brasiliensis]
16 Hb_000603_030 0.1027096651 - - Ribonuclease III, putative [Ricinus communis]
17 Hb_003647_130 0.1034385027 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
18 Hb_005618_050 0.103917805 - - PREDICTED: charged multivesicular body protein 7 isoform X1 [Jatropha curcas]
19 Hb_001357_250 0.1047586766 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
20 Hb_002784_020 0.1053637724 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_006569_030 Hb_006569_030 Hb_002217_030 Hb_002217_030 Hb_006569_030--Hb_002217_030 Hb_009079_030 Hb_009079_030 Hb_006569_030--Hb_009079_030 Hb_001473_180 Hb_001473_180 Hb_006569_030--Hb_001473_180 Hb_002681_090 Hb_002681_090 Hb_006569_030--Hb_002681_090 Hb_001235_140 Hb_001235_140 Hb_006569_030--Hb_001235_140 Hb_004787_080 Hb_004787_080 Hb_006569_030--Hb_004787_080 Hb_003464_080 Hb_003464_080 Hb_002217_030--Hb_003464_080 Hb_000200_120 Hb_000200_120 Hb_002217_030--Hb_000200_120 Hb_000182_040 Hb_000182_040 Hb_002217_030--Hb_000182_040 Hb_001232_010 Hb_001232_010 Hb_002217_030--Hb_001232_010 Hb_001860_030 Hb_001860_030 Hb_002217_030--Hb_001860_030 Hb_002217_030--Hb_001235_140 Hb_003647_130 Hb_003647_130 Hb_009079_030--Hb_003647_130 Hb_006198_120 Hb_006198_120 Hb_009079_030--Hb_006198_120 Hb_003294_070 Hb_003294_070 Hb_009079_030--Hb_003294_070 Hb_002471_290 Hb_002471_290 Hb_009079_030--Hb_002471_290 Hb_003913_070 Hb_003913_070 Hb_009079_030--Hb_003913_070 Hb_009079_030--Hb_001473_180 Hb_000592_030 Hb_000592_030 Hb_001473_180--Hb_000592_030 Hb_002600_150 Hb_002600_150 Hb_001473_180--Hb_002600_150 Hb_009270_020 Hb_009270_020 Hb_001473_180--Hb_009270_020 Hb_000617_180 Hb_000617_180 Hb_001473_180--Hb_000617_180 Hb_002815_030 Hb_002815_030 Hb_001473_180--Hb_002815_030 Hb_007657_020 Hb_007657_020 Hb_002681_090--Hb_007657_020 Hb_002311_290 Hb_002311_290 Hb_002681_090--Hb_002311_290 Hb_000603_030 Hb_000603_030 Hb_002681_090--Hb_000603_030 Hb_000120_280 Hb_000120_280 Hb_002681_090--Hb_000120_280 Hb_002681_090--Hb_002815_030 Hb_000170_090 Hb_000170_090 Hb_002681_090--Hb_000170_090 Hb_010053_030 Hb_010053_030 Hb_001235_140--Hb_010053_030 Hb_001235_140--Hb_007657_020 Hb_001377_160 Hb_001377_160 Hb_001235_140--Hb_001377_160 Hb_001235_140--Hb_002681_090 Hb_000505_020 Hb_000505_020 Hb_001235_140--Hb_000505_020 Hb_000089_120 Hb_000089_120 Hb_001235_140--Hb_000089_120 Hb_002046_010 Hb_002046_010 Hb_004787_080--Hb_002046_010 Hb_001009_280 Hb_001009_280 Hb_004787_080--Hb_001009_280 Hb_004787_080--Hb_000120_280 Hb_004267_040 Hb_004267_040 Hb_004787_080--Hb_004267_040 Hb_000565_040 Hb_000565_040 Hb_004787_080--Hb_000565_040 Hb_183510_020 Hb_183510_020 Hb_004787_080--Hb_183510_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.013 8.29197 11.5361 9.07637 12.8524 10.3908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8806 6.99944 7.25426 23.1395 8.4876

CAGE analysis