Hb_006569_050

Information

Type -
Description -
Location Contig6569: 53782-63079
Sequence    

Annotation

kegg
ID pda:103696779
description 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2-like
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52768: 54041-54432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006569_050 0.0 - - -
2 Hb_005523_010 0.1972384463 transcription factor TF Family: PHD PREDICTED: helicase protein MOM1-like [Jatropha curcas]
3 Hb_002374_250 0.198899986 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000705_250 0.2028415127 - - hypothetical protein CICLE_v10017607mg [Citrus clementina]
5 Hb_000529_140 0.2061475131 - - conserved hypothetical protein [Ricinus communis]
6 Hb_080761_010 0.206978501 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_005754_030 0.2079755825 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01203 [Jatropha curcas]
8 Hb_007576_150 0.2095051102 - - PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic [Jatropha curcas]
9 Hb_030131_030 0.2160631998 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
10 Hb_002986_070 0.2165378527 - - PREDICTED: uncharacterized membrane protein At3g27390 [Jatropha curcas]
11 Hb_000934_020 0.2178200527 - - PREDICTED: uncharacterized protein LOC105629153 [Jatropha curcas]
12 Hb_003089_020 0.2202055303 - - PREDICTED: pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Jatropha curcas]
13 Hb_005511_150 0.2204231286 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g71810, chloroplastic isoform X5 [Populus euphratica]
14 Hb_000404_040 0.2205392969 - - conserved hypothetical protein [Ricinus communis]
15 Hb_008803_040 0.2238087068 - - PREDICTED: uncharacterized protein LOC105157106 [Sesamum indicum]
16 Hb_013459_010 0.2238795772 - - PREDICTED: uncharacterized protein LOC101491556 isoform X2 [Cicer arietinum]
17 Hb_010998_020 0.2241333557 - - ubiquitin ligase E3 alpha, putative [Ricinus communis]
18 Hb_015778_060 0.2258865566 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
19 Hb_005250_030 0.2266187152 - - PREDICTED: uncharacterized protein LOC105640177 [Jatropha curcas]
20 Hb_001050_050 0.2278853549 - - PREDICTED: pentatricopeptide repeat-containing protein At5g57250, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_006569_050 Hb_006569_050 Hb_005523_010 Hb_005523_010 Hb_006569_050--Hb_005523_010 Hb_002374_250 Hb_002374_250 Hb_006569_050--Hb_002374_250 Hb_000705_250 Hb_000705_250 Hb_006569_050--Hb_000705_250 Hb_000529_140 Hb_000529_140 Hb_006569_050--Hb_000529_140 Hb_080761_010 Hb_080761_010 Hb_006569_050--Hb_080761_010 Hb_005754_030 Hb_005754_030 Hb_006569_050--Hb_005754_030 Hb_011616_020 Hb_011616_020 Hb_005523_010--Hb_011616_020 Hb_005250_030 Hb_005250_030 Hb_005523_010--Hb_005250_030 Hb_010757_030 Hb_010757_030 Hb_005523_010--Hb_010757_030 Hb_002986_070 Hb_002986_070 Hb_005523_010--Hb_002986_070 Hb_005523_010--Hb_000529_140 Hb_013459_010 Hb_013459_010 Hb_005523_010--Hb_013459_010 Hb_009778_060 Hb_009778_060 Hb_002374_250--Hb_009778_060 Hb_005511_150 Hb_005511_150 Hb_002374_250--Hb_005511_150 Hb_000676_200 Hb_000676_200 Hb_002374_250--Hb_000676_200 Hb_003089_020 Hb_003089_020 Hb_002374_250--Hb_003089_020 Hb_030131_030 Hb_030131_030 Hb_002374_250--Hb_030131_030 Hb_009178_060 Hb_009178_060 Hb_002374_250--Hb_009178_060 Hb_000318_130 Hb_000318_130 Hb_000705_250--Hb_000318_130 Hb_004218_190 Hb_004218_190 Hb_000705_250--Hb_004218_190 Hb_009486_040 Hb_009486_040 Hb_000705_250--Hb_009486_040 Hb_000705_250--Hb_005511_150 Hb_003025_140 Hb_003025_140 Hb_000705_250--Hb_003025_140 Hb_007527_010 Hb_007527_010 Hb_000705_250--Hb_007527_010 Hb_008511_140 Hb_008511_140 Hb_000529_140--Hb_008511_140 Hb_000390_030 Hb_000390_030 Hb_000529_140--Hb_000390_030 Hb_000529_140--Hb_010757_030 Hb_000495_080 Hb_000495_080 Hb_000529_140--Hb_000495_080 Hb_000640_260 Hb_000640_260 Hb_000529_140--Hb_000640_260 Hb_000958_100 Hb_000958_100 Hb_080761_010--Hb_000958_100 Hb_015778_060 Hb_015778_060 Hb_080761_010--Hb_015778_060 Hb_007576_150 Hb_007576_150 Hb_080761_010--Hb_007576_150 Hb_000856_320 Hb_000856_320 Hb_080761_010--Hb_000856_320 Hb_009150_030 Hb_009150_030 Hb_080761_010--Hb_009150_030 Hb_001050_050 Hb_001050_050 Hb_005754_030--Hb_001050_050 Hb_005754_030--Hb_002986_070 Hb_007735_060 Hb_007735_060 Hb_005754_030--Hb_007735_060 Hb_002016_050 Hb_002016_050 Hb_005754_030--Hb_002016_050 Hb_015183_080 Hb_015183_080 Hb_005754_030--Hb_015183_080 Hb_007234_010 Hb_007234_010 Hb_005754_030--Hb_007234_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0346969 0.427008 0.273581 0.123301 0.130253 0.454375
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0801086 0.0629773 0.562319 0.230543 1.24664

CAGE analysis