Hb_006569_080

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig6569: 110276-113771
Sequence    

Annotation

kegg
ID rcu:RCOM_1298340
description Disease resistance protein RPS2, putative (EC:3.1.3.16)
nr
ID CAN68993.1
description hypothetical protein VITISV_024559 [Vitis vinifera]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID A5AGF6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_024559 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52775: 111400-111552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006569_080 0.0 desease resistance Gene Name: NB-ARC hypothetical protein VITISV_024559 [Vitis vinifera]
2 Hb_002876_340 0.1175822895 - - hypothetical protein POPTR_0013s11770g [Populus trichocarpa]
3 Hb_001775_080 0.1205937638 - - fructose-bisphosphate aldolase, putative [Ricinus communis]
4 Hb_006750_010 0.1339726411 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
5 Hb_001699_080 0.1362553686 - - unnamed protein product [Coffea canephora]
6 Hb_019516_060 0.1380235542 - - PREDICTED: uncharacterized protein LOC105634259 [Jatropha curcas]
7 Hb_000820_110 0.1385489196 - - UDP-XYL synthase 6 isoform 1 [Theobroma cacao]
8 Hb_003097_160 0.1399834632 - - PREDICTED: F-box/WD repeat-containing protein sel-10 [Jatropha curcas]
9 Hb_003929_240 0.1446144631 - - PREDICTED: uncharacterized protein LOC105643616 isoform X2 [Jatropha curcas]
10 Hb_084147_010 0.1450114692 - - amino acid transporter, putative [Ricinus communis]
11 Hb_015941_010 0.1473331988 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
12 Hb_001951_080 0.1477412678 - - O-acetyltransferase, putative [Ricinus communis]
13 Hb_002759_030 0.1489180511 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
14 Hb_014361_010 0.1510076791 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
15 Hb_001008_080 0.151085236 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
16 Hb_000103_130 0.1533829048 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
17 Hb_028396_020 0.1536512827 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
18 Hb_163950_050 0.153862361 - - protein binding protein, putative [Ricinus communis]
19 Hb_001001_070 0.1541789521 - - PREDICTED: uncharacterized protein LOC105633663 [Jatropha curcas]
20 Hb_000005_010 0.1552621025 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]

Gene co-expression network

sample Hb_006569_080 Hb_006569_080 Hb_002876_340 Hb_002876_340 Hb_006569_080--Hb_002876_340 Hb_001775_080 Hb_001775_080 Hb_006569_080--Hb_001775_080 Hb_006750_010 Hb_006750_010 Hb_006569_080--Hb_006750_010 Hb_001699_080 Hb_001699_080 Hb_006569_080--Hb_001699_080 Hb_019516_060 Hb_019516_060 Hb_006569_080--Hb_019516_060 Hb_000820_110 Hb_000820_110 Hb_006569_080--Hb_000820_110 Hb_000103_070 Hb_000103_070 Hb_002876_340--Hb_000103_070 Hb_003097_160 Hb_003097_160 Hb_002876_340--Hb_003097_160 Hb_028396_020 Hb_028396_020 Hb_002876_340--Hb_028396_020 Hb_084147_010 Hb_084147_010 Hb_002876_340--Hb_084147_010 Hb_005542_070 Hb_005542_070 Hb_002876_340--Hb_005542_070 Hb_015941_010 Hb_015941_010 Hb_001775_080--Hb_015941_010 Hb_001775_080--Hb_019516_060 Hb_000069_560 Hb_000069_560 Hb_001775_080--Hb_000069_560 Hb_000922_400 Hb_000922_400 Hb_001775_080--Hb_000922_400 Hb_005305_040 Hb_005305_040 Hb_001775_080--Hb_005305_040 Hb_003462_040 Hb_003462_040 Hb_006750_010--Hb_003462_040 Hb_006750_010--Hb_028396_020 Hb_001369_010 Hb_001369_010 Hb_006750_010--Hb_001369_010 Hb_006750_010--Hb_000820_110 Hb_001195_380 Hb_001195_380 Hb_006750_010--Hb_001195_380 Hb_006750_010--Hb_019516_060 Hb_000103_130 Hb_000103_130 Hb_001699_080--Hb_000103_130 Hb_001512_130 Hb_001512_130 Hb_001699_080--Hb_001512_130 Hb_015807_130 Hb_015807_130 Hb_001699_080--Hb_015807_130 Hb_000270_380 Hb_000270_380 Hb_001699_080--Hb_000270_380 Hb_002081_020 Hb_002081_020 Hb_001699_080--Hb_002081_020 Hb_005656_120 Hb_005656_120 Hb_001699_080--Hb_005656_120 Hb_000246_130 Hb_000246_130 Hb_019516_060--Hb_000246_130 Hb_000030_130 Hb_000030_130 Hb_019516_060--Hb_000030_130 Hb_019516_060--Hb_000820_110 Hb_019516_060--Hb_003462_040 Hb_012395_110 Hb_012395_110 Hb_019516_060--Hb_012395_110 Hb_000297_140 Hb_000297_140 Hb_000820_110--Hb_000297_140 Hb_000193_210 Hb_000193_210 Hb_000820_110--Hb_000193_210 Hb_019516_070 Hb_019516_070 Hb_000820_110--Hb_019516_070 Hb_000077_100 Hb_000077_100 Hb_000820_110--Hb_000077_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0278418 0.110338 0.324038 0.950429 0.00868757 0.00886476
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0210832 0.0829463 0 0.0593659 0.632169

CAGE analysis