Hb_006570_020

Information

Type -
Description -
Location Contig6570: 12033-13217
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52781: 13049-15580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006570_020 0.0 - - -
2 Hb_010449_020 0.1488569061 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
3 Hb_000270_360 0.1495375908 - - PREDICTED: serine/threonine-protein kinase pakF-like [Jatropha curcas]
4 Hb_027892_060 0.1509642457 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
5 Hb_004070_030 0.1512747719 - - PREDICTED: phosphatidate cytidylyltransferase, mitochondrial isoform X2 [Jatropha curcas]
6 Hb_001105_190 0.1533996232 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
7 Hb_015026_120 0.1573590018 - - hypothetical protein TRIUR3_03502 [Triticum urartu]
8 Hb_007632_250 0.1574824272 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001021_230 0.1575847727 - - -
10 Hb_025048_030 0.1576460434 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
11 Hb_000065_080 0.1590043132 - - PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Nelumbo nucifera]
12 Hb_003057_050 0.1593877822 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
13 Hb_017895_050 0.1595509487 - - PREDICTED: LOW QUALITY PROTEIN: UPF0160 protein MYG1, mitochondrial [Jatropha curcas]
14 Hb_000617_320 0.1605553146 - - 40S ribosomal protein S21B [Hevea brasiliensis]
15 Hb_003185_020 0.1616709017 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 50 [Jatropha curcas]
16 Hb_171554_090 0.1628739789 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]
17 Hb_005271_070 0.1632990275 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
18 Hb_004502_030 0.1637275647 - - unknown [Populus trichocarpa]
19 Hb_000270_840 0.1653852826 - - PREDICTED: probable 26S proteasome complex subunit sem1-2 [Nicotiana tomentosiformis]
20 Hb_000442_100 0.1656610465 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]

Gene co-expression network

sample Hb_006570_020 Hb_006570_020 Hb_010449_020 Hb_010449_020 Hb_006570_020--Hb_010449_020 Hb_000270_360 Hb_000270_360 Hb_006570_020--Hb_000270_360 Hb_027892_060 Hb_027892_060 Hb_006570_020--Hb_027892_060 Hb_004070_030 Hb_004070_030 Hb_006570_020--Hb_004070_030 Hb_001105_190 Hb_001105_190 Hb_006570_020--Hb_001105_190 Hb_015026_120 Hb_015026_120 Hb_006570_020--Hb_015026_120 Hb_003185_020 Hb_003185_020 Hb_010449_020--Hb_003185_020 Hb_000392_270 Hb_000392_270 Hb_010449_020--Hb_000392_270 Hb_000768_050 Hb_000768_050 Hb_010449_020--Hb_000768_050 Hb_003688_100 Hb_003688_100 Hb_010449_020--Hb_003688_100 Hb_005489_130 Hb_005489_130 Hb_010449_020--Hb_005489_130 Hb_004722_060 Hb_004722_060 Hb_010449_020--Hb_004722_060 Hb_000270_840 Hb_000270_840 Hb_000270_360--Hb_000270_840 Hb_002942_020 Hb_002942_020 Hb_000270_360--Hb_002942_020 Hb_006501_150 Hb_006501_150 Hb_000270_360--Hb_006501_150 Hb_000270_360--Hb_027892_060 Hb_007441_340 Hb_007441_340 Hb_000270_360--Hb_007441_340 Hb_012675_090 Hb_012675_090 Hb_000270_360--Hb_012675_090 Hb_027892_060--Hb_002942_020 Hb_017895_050 Hb_017895_050 Hb_027892_060--Hb_017895_050 Hb_033491_010 Hb_033491_010 Hb_027892_060--Hb_033491_010 Hb_118977_020 Hb_118977_020 Hb_027892_060--Hb_118977_020 Hb_001437_040 Hb_001437_040 Hb_027892_060--Hb_001437_040 Hb_001369_060 Hb_001369_060 Hb_027892_060--Hb_001369_060 Hb_004232_010 Hb_004232_010 Hb_004070_030--Hb_004232_010 Hb_005741_020 Hb_005741_020 Hb_004070_030--Hb_005741_020 Hb_000442_100 Hb_000442_100 Hb_004070_030--Hb_000442_100 Hb_011609_030 Hb_011609_030 Hb_004070_030--Hb_011609_030 Hb_000714_020 Hb_000714_020 Hb_004070_030--Hb_000714_020 Hb_005271_070 Hb_005271_070 Hb_004070_030--Hb_005271_070 Hb_002107_160 Hb_002107_160 Hb_001105_190--Hb_002107_160 Hb_000563_210 Hb_000563_210 Hb_001105_190--Hb_000563_210 Hb_000573_070 Hb_000573_070 Hb_001105_190--Hb_000573_070 Hb_001054_130 Hb_001054_130 Hb_001105_190--Hb_001054_130 Hb_000076_120 Hb_000076_120 Hb_001105_190--Hb_000076_120 Hb_003777_270 Hb_003777_270 Hb_015026_120--Hb_003777_270 Hb_002762_060 Hb_002762_060 Hb_015026_120--Hb_002762_060 Hb_006447_010 Hb_006447_010 Hb_015026_120--Hb_006447_010 Hb_001248_050 Hb_001248_050 Hb_015026_120--Hb_001248_050 Hb_001840_080 Hb_001840_080 Hb_015026_120--Hb_001840_080 Hb_004109_200 Hb_004109_200 Hb_015026_120--Hb_004109_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.87075 1.83586 1.97223 0.0768657 3.09251 6.11282
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.08133 4.07797 1.16905 0.925923 0.429546

CAGE analysis