Hb_006570_030

Information

Type -
Description -
Location Contig6570: 13318-15622
Sequence    

Annotation

kegg
ID rcu:RCOM_1598200
description ferredoxin--NADP reductase, putative (EC:1.18.1.2)
nr
ID XP_012073786.1
description PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
swissprot
ID P10933
description Ferredoxin--NADP reductase, leaf isozyme, chloroplastic OS=Pisum sativum GN=PETH PE=1 SV=1
trembl
ID A0A067KLA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08203 PE=4 SV=1
Gene Ontology
ID GO:0009534
description ferredoxin--nadp leaf chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52781: 13049-15580
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006570_030 0.0 - - PREDICTED: ferredoxin--NADP reductase, leaf isozyme, chloroplastic [Jatropha curcas]
2 Hb_000139_310 0.0330031002 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic [Jatropha curcas]
3 Hb_002368_060 0.034704625 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001028_040 0.0376882481 - - hypothetical protein POPTR_0018s09860g [Populus trichocarpa]
5 Hb_001322_120 0.0439215298 - - nutrient reservoir, putative [Ricinus communis]
6 Hb_001292_030 0.0457949175 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
7 Hb_001416_130 0.0476184964 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007477_060 0.0496928819 - - unknown [Medicago truncatula]
9 Hb_000101_330 0.0502749539 - - -
10 Hb_000589_340 0.0535613686 - - unknown [Populus trichocarpa x Populus deltoides]
11 Hb_002785_030 0.0546294377 - - Polyketide cyclase/dehydrase and lipid transport superfamily protein [Theobroma cacao]
12 Hb_002871_180 0.0548322379 - - photosystem II 10 kDa polypeptide, chloroplastic [Jatropha curcas]
13 Hb_005063_030 0.0581175634 - - Photosystem II reaction center W protein, chloroplast precursor, putative [Ricinus communis]
14 Hb_001006_040 0.0606865056 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
15 Hb_001766_160 0.0611068366 - - Serine/threonine-protein kinase SAPK1 [Gossypium arboreum]
16 Hb_001975_100 0.0644474409 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
17 Hb_000077_380 0.064787431 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
18 Hb_001958_060 0.0682239128 - - PREDICTED: calcium uptake protein 1, mitochondrial-like [Jatropha curcas]
19 Hb_000545_180 0.0697392337 - - Photosystem II stability/assembly factor HCF136, chloroplast precursor, putative [Ricinus communis]
20 Hb_001892_080 0.0699381973 - - Clavata3/esr-related 16, putative [Theobroma cacao]

Gene co-expression network

sample Hb_006570_030 Hb_006570_030 Hb_000139_310 Hb_000139_310 Hb_006570_030--Hb_000139_310 Hb_002368_060 Hb_002368_060 Hb_006570_030--Hb_002368_060 Hb_001028_040 Hb_001028_040 Hb_006570_030--Hb_001028_040 Hb_001322_120 Hb_001322_120 Hb_006570_030--Hb_001322_120 Hb_001292_030 Hb_001292_030 Hb_006570_030--Hb_001292_030 Hb_001416_130 Hb_001416_130 Hb_006570_030--Hb_001416_130 Hb_000139_310--Hb_001416_130 Hb_000589_340 Hb_000589_340 Hb_000139_310--Hb_000589_340 Hb_000139_310--Hb_001028_040 Hb_000139_310--Hb_002368_060 Hb_000139_310--Hb_001292_030 Hb_002368_060--Hb_001028_040 Hb_002785_030 Hb_002785_030 Hb_002368_060--Hb_002785_030 Hb_002368_060--Hb_001322_120 Hb_002368_060--Hb_001292_030 Hb_001028_040--Hb_002785_030 Hb_001028_040--Hb_001322_120 Hb_001028_040--Hb_001292_030 Hb_001322_120--Hb_001292_030 Hb_001322_120--Hb_002785_030 Hb_002529_120 Hb_002529_120 Hb_001322_120--Hb_002529_120 Hb_001006_040 Hb_001006_040 Hb_001322_120--Hb_001006_040 Hb_001766_160 Hb_001766_160 Hb_001322_120--Hb_001766_160 Hb_001292_030--Hb_001006_040 Hb_001292_030--Hb_002785_030 Hb_000230_420 Hb_000230_420 Hb_001292_030--Hb_000230_420 Hb_001975_100 Hb_001975_100 Hb_001292_030--Hb_001975_100 Hb_001416_130--Hb_000589_340 Hb_029079_010 Hb_029079_010 Hb_001416_130--Hb_029079_010 Hb_001892_080 Hb_001892_080 Hb_001416_130--Hb_001892_080 Hb_000545_180 Hb_000545_180 Hb_001416_130--Hb_000545_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0802793 16.6925 131.905 46.1861 0.0354183 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.215989 0.135915 0 0.517759 227.924

CAGE analysis