Hb_006570_080

Information

Type -
Description -
Location Contig6570: 48549-52987
Sequence    

Annotation

kegg
ID pop:POPTR_0005s26150g
description POPTRDRAFT_818811; hypothetical protein
nr
ID XP_012073790.1
description PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
swissprot
ID Q6DJ78
description BRCA1-A complex subunit BRE OS=Xenopus tropicalis GN=bre PE=2 SV=1
trembl
ID A0A067KLA8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08208 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52785: 50309-52661 , PASA_asmbl_52787: 52316-52760
cDNA
(Sanger)
(ID:Location)		 031_I11.ab1: 52316-52760

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006570_080 0.0 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
2 Hb_002936_010 0.0487053361 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
3 Hb_001359_050 0.0520677219 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005588_060 0.0605236357 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]
5 Hb_000173_280 0.0617999167 - - Speckle-type POZ protein, putative [Ricinus communis]
6 Hb_000460_030 0.062826938 - - 4-hydroxybenzoate octaprenyltransferase, putative [Ricinus communis]
7 Hb_168978_010 0.0661136081 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
8 Hb_024958_010 0.0675098094 - - PREDICTED: LRR repeats and ubiquitin-like domain-containing protein At2g30105 [Jatropha curcas]
9 Hb_006831_140 0.0677885534 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
10 Hb_002232_410 0.06969772 - - PREDICTED: L-galactose dehydrogenase [Jatropha curcas]
11 Hb_000392_420 0.0700972176 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
12 Hb_000431_170 0.0722168156 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 511 [Jatropha curcas]
13 Hb_006059_040 0.0722420275 transcription factor TF Family: SOH1 hypothetical protein PHAVU_007G063000g [Phaseolus vulgaris]
14 Hb_008725_230 0.0730276767 - - PREDICTED: CTP synthase [Jatropha curcas]
15 Hb_164390_010 0.0734268876 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
16 Hb_001511_060 0.0759510996 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
17 Hb_005271_220 0.0770068638 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
18 Hb_000556_120 0.077151899 - - Spastin, putative [Ricinus communis]
19 Hb_000069_720 0.0773035974 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
20 Hb_001221_110 0.0777134278 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]

Gene co-expression network

sample Hb_006570_080 Hb_006570_080 Hb_002936_010 Hb_002936_010 Hb_006570_080--Hb_002936_010 Hb_001359_050 Hb_001359_050 Hb_006570_080--Hb_001359_050 Hb_005588_060 Hb_005588_060 Hb_006570_080--Hb_005588_060 Hb_000173_280 Hb_000173_280 Hb_006570_080--Hb_000173_280 Hb_000460_030 Hb_000460_030 Hb_006570_080--Hb_000460_030 Hb_168978_010 Hb_168978_010 Hb_006570_080--Hb_168978_010 Hb_024958_010 Hb_024958_010 Hb_002936_010--Hb_024958_010 Hb_002936_010--Hb_001359_050 Hb_002936_010--Hb_005588_060 Hb_000720_040 Hb_000720_040 Hb_002936_010--Hb_000720_040 Hb_003994_230 Hb_003994_230 Hb_002936_010--Hb_003994_230 Hb_001359_050--Hb_024958_010 Hb_008725_230 Hb_008725_230 Hb_001359_050--Hb_008725_230 Hb_001221_110 Hb_001221_110 Hb_001359_050--Hb_001221_110 Hb_003464_090 Hb_003464_090 Hb_001359_050--Hb_003464_090 Hb_001359_050--Hb_000173_280 Hb_003058_120 Hb_003058_120 Hb_005588_060--Hb_003058_120 Hb_004108_220 Hb_004108_220 Hb_005588_060--Hb_004108_220 Hb_005588_060--Hb_000173_280 Hb_023001_040 Hb_023001_040 Hb_005588_060--Hb_023001_040 Hb_001221_430 Hb_001221_430 Hb_000173_280--Hb_001221_430 Hb_164390_010 Hb_164390_010 Hb_000173_280--Hb_164390_010 Hb_000778_010 Hb_000778_010 Hb_000173_280--Hb_000778_010 Hb_000431_170 Hb_000431_170 Hb_000460_030--Hb_000431_170 Hb_003582_060 Hb_003582_060 Hb_000460_030--Hb_003582_060 Hb_000483_260 Hb_000483_260 Hb_000460_030--Hb_000483_260 Hb_000460_030--Hb_005588_060 Hb_000460_030--Hb_008725_230 Hb_001511_060 Hb_001511_060 Hb_168978_010--Hb_001511_060 Hb_000359_060 Hb_000359_060 Hb_168978_010--Hb_000359_060 Hb_000260_350 Hb_000260_350 Hb_168978_010--Hb_000260_350 Hb_093458_040 Hb_093458_040 Hb_168978_010--Hb_093458_040 Hb_149985_010 Hb_149985_010 Hb_168978_010--Hb_149985_010 Hb_000030_030 Hb_000030_030 Hb_168978_010--Hb_000030_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9319 13.8319 16.8631 17.218 13.5167 10.3981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.5968 19.4281 12.5702 17.4239 11.6989

CAGE analysis