Hb_006570_140

Information

Type -
Description -
Location Contig6570: 83056-86766
Sequence    

Annotation

kegg
ID rcu:RCOM_1598020
description hypothetical protein
nr
ID XP_012073795.1
description PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08211 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52791: 83017-86742 , PASA_asmbl_52792: 83559-83959 , PASA_asmbl_52793: 84293-84561 , PASA_asmbl_52794: 86217-86708
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006570_140 0.0 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
2 Hb_001922_170 0.0756131398 - - Plastidic pyruvate kinase beta subunit 1 isoform 2 [Theobroma cacao]
3 Hb_000035_500 0.0782549786 - - PREDICTED: ADP-ribosylation factor 1 isoform X2 [Tarenaya hassleriana]
4 Hb_000094_330 0.0858302271 - - PREDICTED: COP9 signalosome complex subunit 4 [Jatropha curcas]
5 Hb_005847_060 0.0861013775 - - hypothetical protein POPTR_0006s02920g [Populus trichocarpa]
6 Hb_001662_150 0.0892158627 - - Scaffold attachment factor B1 [Medicago truncatula]
7 Hb_000731_160 0.090691266 - - PREDICTED: adenosine deaminase-like protein [Jatropha curcas]
8 Hb_001268_240 0.0918600898 - - PREDICTED: uncharacterized protein LOC105630174 isoform X2 [Jatropha curcas]
9 Hb_000110_310 0.0965792898 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase, putative [Ricinus communis]
10 Hb_010222_020 0.0995739583 - - PREDICTED: uncharacterized protein LOC105647642 [Jatropha curcas]
11 Hb_001604_060 0.1003676324 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
12 Hb_032264_120 0.1006467657 - - hypothetical protein CICLE_v10013128mg [Citrus clementina]
13 Hb_000465_090 0.1011618768 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
14 Hb_003050_270 0.1038327609 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic [Jatropha curcas]
15 Hb_054865_120 0.1048371276 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
16 Hb_000329_200 0.105682871 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]
17 Hb_003226_140 0.1063746488 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
18 Hb_029879_010 0.1074235028 - - ribosomal pseudouridine synthase, putative [Ricinus communis]
19 Hb_008748_040 0.1081405502 - - beta-hydroxyacyl-acyl carrier protein dehydratase [Hevea brasiliensis]
20 Hb_032808_010 0.1089051688 - - PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Jatropha curcas]

Gene co-expression network

sample Hb_006570_140 Hb_006570_140 Hb_001922_170 Hb_001922_170 Hb_006570_140--Hb_001922_170 Hb_000035_500 Hb_000035_500 Hb_006570_140--Hb_000035_500 Hb_000094_330 Hb_000094_330 Hb_006570_140--Hb_000094_330 Hb_005847_060 Hb_005847_060 Hb_006570_140--Hb_005847_060 Hb_001662_150 Hb_001662_150 Hb_006570_140--Hb_001662_150 Hb_000731_160 Hb_000731_160 Hb_006570_140--Hb_000731_160 Hb_054865_120 Hb_054865_120 Hb_001922_170--Hb_054865_120 Hb_001922_170--Hb_005847_060 Hb_001579_270 Hb_001579_270 Hb_001922_170--Hb_001579_270 Hb_002820_050 Hb_002820_050 Hb_001922_170--Hb_002820_050 Hb_001922_170--Hb_000094_330 Hb_000245_220 Hb_000245_220 Hb_000035_500--Hb_000245_220 Hb_000035_500--Hb_001922_170 Hb_001268_240 Hb_001268_240 Hb_000035_500--Hb_001268_240 Hb_000035_500--Hb_000731_160 Hb_029879_010 Hb_029879_010 Hb_000035_500--Hb_029879_010 Hb_002876_240 Hb_002876_240 Hb_000094_330--Hb_002876_240 Hb_000094_330--Hb_002820_050 Hb_146673_010 Hb_146673_010 Hb_000094_330--Hb_146673_010 Hb_002820_110 Hb_002820_110 Hb_000094_330--Hb_002820_110 Hb_011716_130 Hb_011716_130 Hb_005847_060--Hb_011716_130 Hb_005847_060--Hb_001662_150 Hb_002811_130 Hb_002811_130 Hb_005847_060--Hb_002811_130 Hb_001157_020 Hb_001157_020 Hb_005847_060--Hb_001157_020 Hb_005847_060--Hb_001579_270 Hb_007163_070 Hb_007163_070 Hb_001662_150--Hb_007163_070 Hb_003226_140 Hb_003226_140 Hb_001662_150--Hb_003226_140 Hb_000329_200 Hb_000329_200 Hb_001662_150--Hb_000329_200 Hb_005697_060 Hb_005697_060 Hb_001662_150--Hb_005697_060 Hb_001662_150--Hb_001157_020 Hb_005306_170 Hb_005306_170 Hb_001662_150--Hb_005306_170 Hb_000012_250 Hb_000012_250 Hb_000731_160--Hb_000012_250 Hb_002477_300 Hb_002477_300 Hb_000731_160--Hb_002477_300 Hb_000731_160--Hb_146673_010 Hb_001472_100 Hb_001472_100 Hb_000731_160--Hb_001472_100 Hb_000185_050 Hb_000185_050 Hb_000731_160--Hb_000185_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.267 3.49145 19.4856 12.6458 11.1399 17.666
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.2313 21.6454 11.6338 14.7494 13.5017

CAGE analysis