Hb_006573_010

Information

Type -
Description -
Location Contig6573: 246-8065
Sequence    

Annotation

kegg
ID cmo:103484110
description heat shock protein 83
nr
ID AAQ08597.1
description heat shock protein [Hevea brasiliensis]
swissprot
ID P51819
description Heat shock protein 83 OS=Ipomoea nil GN=HSP83A PE=2 SV=1
trembl
ID Q71EE1
description Heat shock protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005524
description heat shock protein 83

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52800: 5056-8456
cDNA
(Sanger)
(ID:Location)		 014_H09.ab1: 5125-6632 , 017_E14.ab1: 5122-6531 , 050_I01.ab1: 5122-6367

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_010 0.0 - - heat shock protein [Hevea brasiliensis]
2 Hb_012753_040 0.1453389371 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
3 Hb_007257_010 0.153478773 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
4 Hb_001766_040 0.1653845485 - - chaperone clpb, putative [Ricinus communis]
5 Hb_000302_300 0.1684923923 - - PREDICTED: heat shock protein 83 [Populus euphratica]
6 Hb_020247_050 0.1788910069 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
7 Hb_000991_050 0.1873870961 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
8 Hb_006629_020 0.1930767623 - - ferric reductase oxidase [Manihot esculenta]
9 Hb_010407_190 0.1950110266 - - phosphate transporter [Manihot esculenta]
10 Hb_000631_140 0.1959266603 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
11 Hb_021254_010 0.2014783092 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
12 Hb_000922_220 0.2049636537 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
13 Hb_020094_020 0.2054627191 - - PREDICTED: 17.1 kDa class II heat shock protein-like [Pyrus x bretschneideri]
14 Hb_006721_070 0.206265453 - - PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Jatropha curcas]
15 Hb_009674_080 0.2074446296 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
16 Hb_000015_160 0.2079587807 - - Heat shock cognate 70 kDa protein 1 [Triticum urartu]
17 Hb_005736_050 0.2083212086 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
18 Hb_000062_110 0.2118910557 transcription factor TF Family: MYB hypothetical protein JCGZ_17894 [Jatropha curcas]
19 Hb_000264_230 0.2156572652 - - PREDICTED: uncharacterized protein LOC105649528 [Jatropha curcas]
20 Hb_000127_190 0.2182728872 - - PREDICTED: protein GIGANTEA [Jatropha curcas]

Gene co-expression network

sample Hb_006573_010 Hb_006573_010 Hb_012753_040 Hb_012753_040 Hb_006573_010--Hb_012753_040 Hb_007257_010 Hb_007257_010 Hb_006573_010--Hb_007257_010 Hb_001766_040 Hb_001766_040 Hb_006573_010--Hb_001766_040 Hb_000302_300 Hb_000302_300 Hb_006573_010--Hb_000302_300 Hb_020247_050 Hb_020247_050 Hb_006573_010--Hb_020247_050 Hb_000991_050 Hb_000991_050 Hb_006573_010--Hb_000991_050 Hb_000015_160 Hb_000015_160 Hb_012753_040--Hb_000015_160 Hb_009674_080 Hb_009674_080 Hb_012753_040--Hb_009674_080 Hb_012753_040--Hb_000991_050 Hb_002774_150 Hb_002774_150 Hb_012753_040--Hb_002774_150 Hb_000922_220 Hb_000922_220 Hb_012753_040--Hb_000922_220 Hb_003120_070 Hb_003120_070 Hb_012753_040--Hb_003120_070 Hb_010407_190 Hb_010407_190 Hb_007257_010--Hb_010407_190 Hb_027380_230 Hb_027380_230 Hb_007257_010--Hb_027380_230 Hb_007257_010--Hb_020247_050 Hb_008147_050 Hb_008147_050 Hb_007257_010--Hb_008147_050 Hb_007257_010--Hb_001766_040 Hb_000062_110 Hb_000062_110 Hb_001766_040--Hb_000062_110 Hb_001366_160 Hb_001366_160 Hb_001766_040--Hb_001366_160 Hb_001766_040--Hb_010407_190 Hb_005962_010 Hb_005962_010 Hb_001766_040--Hb_005962_010 Hb_002368_070 Hb_002368_070 Hb_001766_040--Hb_002368_070 Hb_002843_220 Hb_002843_220 Hb_000302_300--Hb_002843_220 Hb_021254_010 Hb_021254_010 Hb_000302_300--Hb_021254_010 Hb_000302_300--Hb_020247_050 Hb_000631_140 Hb_000631_140 Hb_000302_300--Hb_000631_140 Hb_000302_300--Hb_000991_050 Hb_020247_050--Hb_002843_220 Hb_000796_050 Hb_000796_050 Hb_020247_050--Hb_000796_050 Hb_020247_050--Hb_012753_040 Hb_000991_050--Hb_000015_160 Hb_000991_050--Hb_002774_150 Hb_000991_050--Hb_009674_080 Hb_004324_060 Hb_004324_060 Hb_000991_050--Hb_004324_060 Hb_000139_180 Hb_000139_180 Hb_000991_050--Hb_000139_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
426.17 2158.68 342.396 456.895 1397.32 576.391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
108.462 31.9385 98.2515 152.116 1823.23

CAGE analysis