Hb_006573_200

Information

Type -
Description -
Location Contig6573: 133669-135924
Sequence    

Annotation

kegg
ID rcu:RCOM_1581920
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012090723.1
description PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Jatropha curcas]
swissprot
ID Q9FLX6
description Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2 SV=1
trembl
ID A0A067JHH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26039 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52823: 133947-134335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_200 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At5g52850, chloroplastic [Jatropha curcas]
2 Hb_000031_050 0.0689301018 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
3 Hb_000077_230 0.0917797548 - - PREDICTED: uncharacterized protein LOC105646947 [Jatropha curcas]
4 Hb_000953_010 0.0929517703 - - hypothetical protein CISIN_1g0425012mg, partial [Citrus sinensis]
5 Hb_124315_020 0.0962908922 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
6 Hb_000077_070 0.0965950416 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
7 Hb_001728_100 0.0998608087 - - hypothetical protein JCGZ_03429 [Jatropha curcas]
8 Hb_001049_030 0.1002704684 - - catalytic, putative [Ricinus communis]
9 Hb_000062_250 0.1005024212 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
10 Hb_000574_410 0.1005083767 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600 [Jatropha curcas]
11 Hb_013405_050 0.1029124588 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
12 Hb_000336_140 0.1051294442 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007757_110 0.1065286061 - - PREDICTED: E3 ubiquitin-protein ligase UPL5 [Jatropha curcas]
14 Hb_000619_080 0.1067544087 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 21 [Jatropha curcas]
15 Hb_001141_330 0.1102049952 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
16 Hb_156850_030 0.1115815823 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
17 Hb_001245_070 0.1117504401 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
18 Hb_004204_080 0.1133391958 - - diacylglycerol kinase, theta, putative [Ricinus communis]
19 Hb_012395_220 0.1141187343 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
20 Hb_001516_100 0.1151217196 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_006573_200 Hb_006573_200 Hb_000031_050 Hb_000031_050 Hb_006573_200--Hb_000031_050 Hb_000077_230 Hb_000077_230 Hb_006573_200--Hb_000077_230 Hb_000953_010 Hb_000953_010 Hb_006573_200--Hb_000953_010 Hb_124315_020 Hb_124315_020 Hb_006573_200--Hb_124315_020 Hb_000077_070 Hb_000077_070 Hb_006573_200--Hb_000077_070 Hb_001728_100 Hb_001728_100 Hb_006573_200--Hb_001728_100 Hb_006649_060 Hb_006649_060 Hb_000031_050--Hb_006649_060 Hb_000031_050--Hb_000077_230 Hb_004204_080 Hb_004204_080 Hb_000031_050--Hb_004204_080 Hb_007757_110 Hb_007757_110 Hb_000031_050--Hb_007757_110 Hb_000031_050--Hb_124315_020 Hb_000062_250 Hb_000062_250 Hb_000077_230--Hb_000062_250 Hb_000077_230--Hb_000077_070 Hb_000025_360 Hb_000025_360 Hb_000077_230--Hb_000025_360 Hb_000107_500 Hb_000107_500 Hb_000077_230--Hb_000107_500 Hb_000174_220 Hb_000174_220 Hb_000077_230--Hb_000174_220 Hb_000803_190 Hb_000803_190 Hb_000953_010--Hb_000803_190 Hb_004734_060 Hb_004734_060 Hb_000953_010--Hb_004734_060 Hb_000836_360 Hb_000836_360 Hb_000953_010--Hb_000836_360 Hb_000173_400 Hb_000173_400 Hb_000953_010--Hb_000173_400 Hb_033152_080 Hb_033152_080 Hb_000953_010--Hb_033152_080 Hb_156850_030 Hb_156850_030 Hb_000953_010--Hb_156850_030 Hb_001247_070 Hb_001247_070 Hb_124315_020--Hb_001247_070 Hb_000139_090 Hb_000139_090 Hb_124315_020--Hb_000139_090 Hb_003216_080 Hb_003216_080 Hb_124315_020--Hb_003216_080 Hb_001930_010 Hb_001930_010 Hb_124315_020--Hb_001930_010 Hb_001245_070 Hb_001245_070 Hb_124315_020--Hb_001245_070 Hb_000077_070--Hb_000025_360 Hb_000336_140 Hb_000336_140 Hb_000077_070--Hb_000336_140 Hb_000032_320 Hb_000032_320 Hb_000077_070--Hb_000032_320 Hb_000077_070--Hb_001247_070 Hb_000077_070--Hb_001728_100 Hb_001728_100--Hb_156850_030 Hb_001728_100--Hb_000032_320 Hb_002027_260 Hb_002027_260 Hb_001728_100--Hb_002027_260 Hb_001728_100--Hb_000107_500 Hb_001728_100--Hb_004204_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.72319 3.32311 0.793567 0.687959 2.91068 3.23067
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.26479 1.58612 3.54929 0.852833 0.857273

CAGE analysis