Hb_006573_220

Information

Type -
Description -
Location Contig6573: 143121-146757
Sequence    

Annotation

kegg
ID rcu:RCOM_1581900
description protein with unknown function
nr
ID XP_012090163.1
description PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
swissprot
ID Q2KMM2
description Trafficking protein particle complex subunit 1 OS=Rattus norvegicus GN=Trappc1 PE=2 SV=1
trembl
ID A0A067JEE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26037 PE=4 SV=1
Gene Ontology
ID GO:0005801
description trafficking protein particle complex subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52826: 142973-146717 , PASA_asmbl_52828: 145259-145712
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_220 0.0 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
2 Hb_001191_090 0.0557644906 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
3 Hb_000329_330 0.0578877215 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
4 Hb_001687_040 0.0647211571 - - actin-depolymerizing factor [Hevea brasiliensis]
5 Hb_002097_060 0.0663610372 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
6 Hb_003376_030 0.0715850667 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
7 Hb_007382_150 0.0726693616 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
8 Hb_148200_010 0.0726703179 - - hypothetical protein 33 [Hevea brasiliensis]
9 Hb_000069_100 0.0730437019 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000023_340 0.0762249008 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
11 Hb_003053_030 0.0766698517 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
12 Hb_000181_300 0.076911986 - - PREDICTED: uncharacterized protein LOC105650445 isoform X2 [Jatropha curcas]
13 Hb_000012_100 0.0775337933 - - UPF0587 protein C1orf123 homolog [Jatropha curcas]
14 Hb_000272_070 0.0778936224 - - snare protein YKt [Hevea brasiliensis]
15 Hb_001912_010 0.0782691872 - - PREDICTED: uncharacterized protein LOC105636600 [Jatropha curcas]
16 Hb_002374_390 0.0824051116 - - vacuolar ATP synthase proteolipid subunit 1, 2, 3, putative [Ricinus communis]
17 Hb_007479_020 0.0837003 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
18 Hb_000347_410 0.085793829 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
19 Hb_000173_220 0.0868655135 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
20 Hb_007926_060 0.0874962452 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]

Gene co-expression network

sample Hb_006573_220 Hb_006573_220 Hb_001191_090 Hb_001191_090 Hb_006573_220--Hb_001191_090 Hb_000329_330 Hb_000329_330 Hb_006573_220--Hb_000329_330 Hb_001687_040 Hb_001687_040 Hb_006573_220--Hb_001687_040 Hb_002097_060 Hb_002097_060 Hb_006573_220--Hb_002097_060 Hb_003376_030 Hb_003376_030 Hb_006573_220--Hb_003376_030 Hb_007382_150 Hb_007382_150 Hb_006573_220--Hb_007382_150 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_003053_030 Hb_003053_030 Hb_001191_090--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_001191_090--Hb_148200_010 Hb_000181_300 Hb_000181_300 Hb_001191_090--Hb_000181_300 Hb_001191_090--Hb_003376_030 Hb_003376_130 Hb_003376_130 Hb_000329_330--Hb_003376_130 Hb_000069_100 Hb_000069_100 Hb_000329_330--Hb_000069_100 Hb_000329_330--Hb_148200_010 Hb_000329_330--Hb_003376_030 Hb_000329_330--Hb_002097_060 Hb_001687_040--Hb_002097_060 Hb_001687_040--Hb_001191_090 Hb_001687_040--Hb_000069_100 Hb_000272_070 Hb_000272_070 Hb_001687_040--Hb_000272_070 Hb_001687_040--Hb_003053_030 Hb_002097_060--Hb_003376_030 Hb_002097_060--Hb_000069_100 Hb_003455_040 Hb_003455_040 Hb_002097_060--Hb_003455_040 Hb_001575_020 Hb_001575_020 Hb_002097_060--Hb_001575_020 Hb_002097_060--Hb_148200_010 Hb_003376_030--Hb_003455_040 Hb_003376_030--Hb_148200_010 Hb_000146_020 Hb_000146_020 Hb_003376_030--Hb_000146_020 Hb_001160_030 Hb_001160_030 Hb_003376_030--Hb_001160_030 Hb_002027_210 Hb_002027_210 Hb_003376_030--Hb_002027_210 Hb_001616_060 Hb_001616_060 Hb_007382_150--Hb_001616_060 Hb_007382_150--Hb_002097_060 Hb_007382_150--Hb_000069_100 Hb_007943_090 Hb_007943_090 Hb_007382_150--Hb_007943_090 Hb_007382_150--Hb_003376_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.9854 8.29653 12.6757 23.3311 18.8328 25.8354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.0112 80.9996 67.3905 19.7437 9.0446

CAGE analysis