Hb_006573_260

Information

Type -
Description -
Location Contig6573: 169309-169614
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0A9PII2
description Uncharacterized protein OS=Arundo donax PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_260 0.0 - - -
2 Hb_028927_010 0.1087863237 - - leucine-rich repeat protein, putative [Ricinus communis]
3 Hb_000057_180 0.1162938945 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
4 Hb_021888_010 0.1240128114 - - PREDICTED: aspartic proteinase-like protein 1 isoform X1 [Jatropha curcas]
5 Hb_002003_030 0.1258870312 - - PREDICTED: UDP-glycosyltransferase 74F1-like [Jatropha curcas]
6 Hb_116469_010 0.130803029 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
7 Hb_106321_010 0.133740485 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]
8 Hb_000101_370 0.1389862244 - - PREDICTED: dihydrofolate reductase-like isoform X1 [Jatropha curcas]
9 Hb_002304_190 0.1393703684 - - PREDICTED: 3'-N-debenzoyl-2'-deoxytaxol N-benzoyltransferase [Jatropha curcas]
10 Hb_022092_050 0.13964038 - - PREDICTED: uncharacterized protein LOC105136214 [Populus euphratica]
11 Hb_002685_100 0.1417205304 - - low temperature inducible SLTI66 [Glycine max]
12 Hb_150730_010 0.1450825518 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
13 Hb_005168_030 0.1513330727 - - unknown [Zea mays]
14 Hb_005730_070 0.1513373073 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 8 [Jatropha curcas]
15 Hb_011861_020 0.151390517 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
16 Hb_164300_010 0.153666828 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
17 Hb_000471_010 0.1539500958 - - ATP binding protein, putative [Ricinus communis]
18 Hb_123560_020 0.1577262031 - - hypothetical protein JCGZ_12464 [Jatropha curcas]
19 Hb_000705_090 0.1618438375 - - PREDICTED: uncharacterized protein LOC100246830 [Vitis vinifera]
20 Hb_002081_220 0.1653189784 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]

Gene co-expression network

sample Hb_006573_260 Hb_006573_260 Hb_028927_010 Hb_028927_010 Hb_006573_260--Hb_028927_010 Hb_000057_180 Hb_000057_180 Hb_006573_260--Hb_000057_180 Hb_021888_010 Hb_021888_010 Hb_006573_260--Hb_021888_010 Hb_002003_030 Hb_002003_030 Hb_006573_260--Hb_002003_030 Hb_116469_010 Hb_116469_010 Hb_006573_260--Hb_116469_010 Hb_106321_010 Hb_106321_010 Hb_006573_260--Hb_106321_010 Hb_028927_010--Hb_116469_010 Hb_028927_010--Hb_000057_180 Hb_011861_020 Hb_011861_020 Hb_028927_010--Hb_011861_020 Hb_000589_100 Hb_000589_100 Hb_028927_010--Hb_000589_100 Hb_000723_240 Hb_000723_240 Hb_028927_010--Hb_000723_240 Hb_000057_180--Hb_011861_020 Hb_150730_010 Hb_150730_010 Hb_000057_180--Hb_150730_010 Hb_000057_180--Hb_116469_010 Hb_000471_010 Hb_000471_010 Hb_000057_180--Hb_000471_010 Hb_000057_180--Hb_002003_030 Hb_001158_110 Hb_001158_110 Hb_021888_010--Hb_001158_110 Hb_001002_090 Hb_001002_090 Hb_021888_010--Hb_001002_090 Hb_002081_220 Hb_002081_220 Hb_021888_010--Hb_002081_220 Hb_009767_030 Hb_009767_030 Hb_021888_010--Hb_009767_030 Hb_000187_110 Hb_000187_110 Hb_021888_010--Hb_000187_110 Hb_002003_030--Hb_116469_010 Hb_002003_030--Hb_150730_010 Hb_009778_050 Hb_009778_050 Hb_002003_030--Hb_009778_050 Hb_002003_030--Hb_011861_020 Hb_002003_030--Hb_000471_010 Hb_116469_010--Hb_011861_020 Hb_116469_010--Hb_150730_010 Hb_000005_350 Hb_000005_350 Hb_116469_010--Hb_000005_350 Hb_005168_030 Hb_005168_030 Hb_106321_010--Hb_005168_030 Hb_123560_020 Hb_123560_020 Hb_106321_010--Hb_123560_020 Hb_000215_420 Hb_000215_420 Hb_106321_010--Hb_000215_420 Hb_000705_090 Hb_000705_090 Hb_106321_010--Hb_000705_090 Hb_011440_010 Hb_011440_010 Hb_106321_010--Hb_011440_010 Hb_106321_010--Hb_002003_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.299395 1.43832 9.52282 3.86716 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 15.4441 1.7521

CAGE analysis