Hb_006573_290

Information

Type -
Description -
Location Contig6573: 187262-189943
Sequence    

Annotation

kegg
ID vvi:100267262
description reticulon-like protein B2
nr
ID XP_012090159.1
description PREDICTED: reticulon-like protein B5 [Jatropha curcas]
swissprot
ID O82352
description Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1
trembl
ID A0A067JED0
description Reticulon-like protein OS=Jatropha curcas GN=JCGZ_26032 PE=4 SV=1
Gene Ontology
ID GO:0005789
description reticulon-like protein b1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52834: 187595-189109 , PASA_asmbl_52835: 189174-189976
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_290 0.0 - - PREDICTED: reticulon-like protein B5 [Jatropha curcas]
2 Hb_000649_140 0.1114783058 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
3 Hb_148209_010 0.1139310345 - - RAS-related GTP-binding family protein [Populus trichocarpa]
4 Hb_021409_080 0.1149299358 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
5 Hb_002154_110 0.1160090926 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
6 Hb_000428_060 0.1161799451 - - malate dehydrogenase, putative [Ricinus communis]
7 Hb_000946_100 0.1183934102 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
8 Hb_001019_150 0.1203794219 - - Acyl-protein thioesterase, putative [Ricinus communis]
9 Hb_003291_020 0.1215086741 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
10 Hb_000563_200 0.1250066899 - - hypothetical protein JCGZ_18930 [Jatropha curcas]
11 Hb_002876_020 0.1250175187 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
12 Hb_004627_030 0.1254341703 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
13 Hb_000615_050 0.1290028395 - - Potassium transporter 11 family protein [Populus trichocarpa]
14 Hb_111985_110 0.1303805614 - - thioredoxin H-type 3 [Hevea brasiliensis]
15 Hb_003106_100 0.1303915961 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
16 Hb_004007_110 0.1309719913 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
17 Hb_011249_020 0.1320167602 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
18 Hb_000377_150 0.1334037574 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
19 Hb_002301_160 0.1349442884 - - PREDICTED: pentatricopeptide repeat-containing protein At5g04780-like [Jatropha curcas]
20 Hb_180343_010 0.1350110637 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006573_290 Hb_006573_290 Hb_000649_140 Hb_000649_140 Hb_006573_290--Hb_000649_140 Hb_148209_010 Hb_148209_010 Hb_006573_290--Hb_148209_010 Hb_021409_080 Hb_021409_080 Hb_006573_290--Hb_021409_080 Hb_002154_110 Hb_002154_110 Hb_006573_290--Hb_002154_110 Hb_000428_060 Hb_000428_060 Hb_006573_290--Hb_000428_060 Hb_000946_100 Hb_000946_100 Hb_006573_290--Hb_000946_100 Hb_003106_100 Hb_003106_100 Hb_000649_140--Hb_003106_100 Hb_002876_020 Hb_002876_020 Hb_000649_140--Hb_002876_020 Hb_000700_040 Hb_000700_040 Hb_000649_140--Hb_000700_040 Hb_001307_030 Hb_001307_030 Hb_000649_140--Hb_001307_030 Hb_011249_020 Hb_011249_020 Hb_000649_140--Hb_011249_020 Hb_000649_140--Hb_000428_060 Hb_003291_020 Hb_003291_020 Hb_148209_010--Hb_003291_020 Hb_002303_060 Hb_002303_060 Hb_148209_010--Hb_002303_060 Hb_001123_160 Hb_001123_160 Hb_148209_010--Hb_001123_160 Hb_000922_040 Hb_000922_040 Hb_148209_010--Hb_000922_040 Hb_000563_200 Hb_000563_200 Hb_148209_010--Hb_000563_200 Hb_000384_120 Hb_000384_120 Hb_148209_010--Hb_000384_120 Hb_012305_130 Hb_012305_130 Hb_021409_080--Hb_012305_130 Hb_111985_110 Hb_111985_110 Hb_021409_080--Hb_111985_110 Hb_004627_030 Hb_004627_030 Hb_021409_080--Hb_004627_030 Hb_180343_010 Hb_180343_010 Hb_021409_080--Hb_180343_010 Hb_002110_100 Hb_002110_100 Hb_021409_080--Hb_002110_100 Hb_000110_120 Hb_000110_120 Hb_021409_080--Hb_000110_120 Hb_003103_010 Hb_003103_010 Hb_002154_110--Hb_003103_010 Hb_008642_030 Hb_008642_030 Hb_002154_110--Hb_008642_030 Hb_000016_170 Hb_000016_170 Hb_002154_110--Hb_000016_170 Hb_002154_110--Hb_000563_200 Hb_145880_020 Hb_145880_020 Hb_002154_110--Hb_145880_020 Hb_000428_060--Hb_003106_100 Hb_000428_060--Hb_001123_160 Hb_005276_040 Hb_005276_040 Hb_000428_060--Hb_005276_040 Hb_000428_060--Hb_002876_020 Hb_000428_060--Hb_180343_010 Hb_002045_060 Hb_002045_060 Hb_000428_060--Hb_002045_060 Hb_000946_100--Hb_000016_170 Hb_000946_100--Hb_002876_020 Hb_000946_100--Hb_002154_110 Hb_002677_020 Hb_002677_020 Hb_000946_100--Hb_002677_020 Hb_005496_090 Hb_005496_090 Hb_000946_100--Hb_005496_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.09485 2.22202 3.57867 11.4009 1.36309 1.6083
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.3185 9.25062 7.38269 3.88539 7.28586

CAGE analysis