Hb_006573_300

Information

Type -
Description -
Location Contig6573: 190610-201331
Sequence    

Annotation

kegg
ID rcu:RCOM_1581520
description ATP binding protein, putative (EC:3.6.4.3)
nr
ID XP_002513623.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q6AZT2
description Spastin OS=Xenopus laevis GN=spast PE=2 SV=1
trembl
ID B9RIQ4
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1581520 PE=3 SV=1
Gene Ontology
ID GO:0005524
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006573_300 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_001114_070 0.1100830231 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
3 Hb_000853_060 0.1570593395 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
4 Hb_006453_010 0.1605727114 - - PREDICTED: glutaredoxin-C9 [Jatropha curcas]
5 Hb_007676_020 0.169081864 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
6 Hb_004195_090 0.1743258046 - - PREDICTED: probable mitochondrial chaperone bcs1 [Jatropha curcas]
7 Hb_020805_170 0.1792328965 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
8 Hb_002686_120 0.1828257079 - - short-chain type dehydrogenase, putative [Ricinus communis]
9 Hb_003120_040 0.1893320903 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Jatropha curcas]
10 Hb_000042_250 0.1924279239 - - PREDICTED: uncharacterized protein LOC105632812 isoform X1 [Jatropha curcas]
11 Hb_007919_040 0.1956812346 - - PREDICTED: protein LYK5 [Jatropha curcas]
12 Hb_116349_040 0.1972847808 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
13 Hb_000165_210 0.1976170234 - - PREDICTED: trihelix transcription factor ASIL2 isoform X2 [Jatropha curcas]
14 Hb_012098_170 0.1979895098 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_16874 [Jatropha curcas]
15 Hb_001726_110 0.1988529858 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
16 Hb_027380_200 0.1998112788 transcription factor TF Family: ARF PREDICTED: auxin response factor 6 isoform X2 [Jatropha curcas]
17 Hb_000084_220 0.200547266 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
18 Hb_008066_070 0.2022728248 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
19 Hb_001341_200 0.2024927783 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
20 Hb_000645_210 0.2026770846 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006573_300 Hb_006573_300 Hb_001114_070 Hb_001114_070 Hb_006573_300--Hb_001114_070 Hb_000853_060 Hb_000853_060 Hb_006573_300--Hb_000853_060 Hb_006453_010 Hb_006453_010 Hb_006573_300--Hb_006453_010 Hb_007676_020 Hb_007676_020 Hb_006573_300--Hb_007676_020 Hb_004195_090 Hb_004195_090 Hb_006573_300--Hb_004195_090 Hb_020805_170 Hb_020805_170 Hb_006573_300--Hb_020805_170 Hb_001114_070--Hb_007676_020 Hb_001114_070--Hb_020805_170 Hb_031862_040 Hb_031862_040 Hb_001114_070--Hb_031862_040 Hb_001114_070--Hb_000853_060 Hb_012098_170 Hb_012098_170 Hb_001114_070--Hb_012098_170 Hb_000165_210 Hb_000165_210 Hb_000853_060--Hb_000165_210 Hb_007919_040 Hb_007919_040 Hb_000853_060--Hb_007919_040 Hb_003120_040 Hb_003120_040 Hb_000853_060--Hb_003120_040 Hb_029584_090 Hb_029584_090 Hb_000853_060--Hb_029584_090 Hb_006453_010--Hb_000853_060 Hb_116349_040 Hb_116349_040 Hb_006453_010--Hb_116349_040 Hb_006453_010--Hb_001114_070 Hb_006453_010--Hb_000165_210 Hb_000983_080 Hb_000983_080 Hb_006453_010--Hb_000983_080 Hb_008066_070 Hb_008066_070 Hb_007676_020--Hb_008066_070 Hb_007676_020--Hb_020805_170 Hb_000084_220 Hb_000084_220 Hb_007676_020--Hb_000084_220 Hb_007676_020--Hb_031862_040 Hb_001341_200 Hb_001341_200 Hb_004195_090--Hb_001341_200 Hb_009736_010 Hb_009736_010 Hb_004195_090--Hb_009736_010 Hb_004195_090--Hb_029584_090 Hb_030944_010 Hb_030944_010 Hb_004195_090--Hb_030944_010 Hb_000059_300 Hb_000059_300 Hb_004195_090--Hb_000059_300 Hb_032631_050 Hb_032631_050 Hb_004195_090--Hb_032631_050 Hb_020805_170--Hb_008066_070 Hb_000140_410 Hb_000140_410 Hb_020805_170--Hb_000140_410 Hb_000022_180 Hb_000022_180 Hb_020805_170--Hb_000022_180 Hb_005147_040 Hb_005147_040 Hb_020805_170--Hb_005147_040 Hb_000905_170 Hb_000905_170 Hb_020805_170--Hb_000905_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.365639 7.01248 1.10867 3.05346 0.155318 0.36776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.04144 1.45897 1.774 8.01085 0.836538

CAGE analysis