Hb_006582_020

Information

Type -
Description -
Location Contig6582: 10257-10973
Sequence    

Annotation

kegg
ID tcc:TCM_042203
description Zinc finger protein ZFPM1
nr
ID XP_007016962.1
description Zinc finger protein ZFPM1 [Theobroma cacao]
swissprot
ID Q9LMK2
description Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 OS=Arabidopsis thaliana GN=LSH6 PE=1 SV=1
trembl
ID A0A061GYI7
description Zinc finger protein ZFPM1 OS=Theobroma cacao GN=TCM_042203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52847: 9984-11128
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006582_020 0.0 - - Zinc finger protein ZFPM1 [Theobroma cacao]
2 Hb_002435_110 0.1006037488 transcription factor TF Family: SNF2 PREDICTED: chromodomain-helicase-DNA-binding protein 1-like [Jatropha curcas]
3 Hb_004032_270 0.1068955785 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
4 Hb_005843_100 0.1223660768 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Jatropha curcas]
5 Hb_000016_100 0.1230363449 transcription factor TF Family: TCP PREDICTED: transcription factor TCP19 [Jatropha curcas]
6 Hb_001318_030 0.124007783 - - PREDICTED: uncharacterized protein LOC105642686 [Jatropha curcas]
7 Hb_000237_080 0.125331891 transcription factor TF Family: PHD PREDICTED: chromatin structure-remodeling complex subunit RSC1 [Jatropha curcas]
8 Hb_146464_010 0.1267516461 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
9 Hb_000567_210 0.1277903784 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2-like [Jatropha curcas]
10 Hb_009564_030 0.1302910336 transcription factor TF Family: bHLH Transcription factor AtMYC2, putative [Ricinus communis]
11 Hb_012807_050 0.1324612362 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
12 Hb_001610_110 0.1329131238 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
13 Hb_004324_340 0.135288441 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009838_050 0.1358633055 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005928_110 0.1359206993 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
16 Hb_002685_170 0.1379008501 - - hypothetical protein EUTSA_v10019281mg [Eutrema salsugineum]
17 Hb_001073_070 0.137956293 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
18 Hb_000859_060 0.1380674827 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
19 Hb_005551_050 0.1388521648 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
20 Hb_001564_080 0.1396067699 transcription factor TF Family: NF-YB PREDICTED: protein Dr1 homolog isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006582_020 Hb_006582_020 Hb_002435_110 Hb_002435_110 Hb_006582_020--Hb_002435_110 Hb_004032_270 Hb_004032_270 Hb_006582_020--Hb_004032_270 Hb_005843_100 Hb_005843_100 Hb_006582_020--Hb_005843_100 Hb_000016_100 Hb_000016_100 Hb_006582_020--Hb_000016_100 Hb_001318_030 Hb_001318_030 Hb_006582_020--Hb_001318_030 Hb_000237_080 Hb_000237_080 Hb_006582_020--Hb_000237_080 Hb_000567_210 Hb_000567_210 Hb_002435_110--Hb_000567_210 Hb_000859_060 Hb_000859_060 Hb_002435_110--Hb_000859_060 Hb_002685_170 Hb_002685_170 Hb_002435_110--Hb_002685_170 Hb_009838_050 Hb_009838_050 Hb_002435_110--Hb_009838_050 Hb_009767_100 Hb_009767_100 Hb_002435_110--Hb_009767_100 Hb_004032_270--Hb_009838_050 Hb_004032_270--Hb_001318_030 Hb_001610_110 Hb_001610_110 Hb_004032_270--Hb_001610_110 Hb_076693_020 Hb_076693_020 Hb_004032_270--Hb_076693_020 Hb_004032_270--Hb_000567_210 Hb_012807_050 Hb_012807_050 Hb_004032_270--Hb_012807_050 Hb_002813_050 Hb_002813_050 Hb_005843_100--Hb_002813_050 Hb_005843_100--Hb_001318_030 Hb_096224_040 Hb_096224_040 Hb_005843_100--Hb_096224_040 Hb_005843_150 Hb_005843_150 Hb_005843_100--Hb_005843_150 Hb_012395_220 Hb_012395_220 Hb_005843_100--Hb_012395_220 Hb_002374_310 Hb_002374_310 Hb_005843_100--Hb_002374_310 Hb_000016_100--Hb_004032_270 Hb_000016_100--Hb_009838_050 Hb_000016_100--Hb_002435_110 Hb_000025_340 Hb_000025_340 Hb_000016_100--Hb_000025_340 Hb_000390_150 Hb_000390_150 Hb_000016_100--Hb_000390_150 Hb_001318_030--Hb_000237_080 Hb_001318_030--Hb_012807_050 Hb_004128_060 Hb_004128_060 Hb_001318_030--Hb_004128_060 Hb_001318_030--Hb_009838_050 Hb_000976_150 Hb_000976_150 Hb_001318_030--Hb_000976_150 Hb_004785_060 Hb_004785_060 Hb_000237_080--Hb_004785_060 Hb_009615_150 Hb_009615_150 Hb_000237_080--Hb_009615_150 Hb_000237_080--Hb_002813_050 Hb_005147_090 Hb_005147_090 Hb_000237_080--Hb_005147_090 Hb_000237_080--Hb_000859_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.5081 60.0241 8.77985 12.0857 22.4471 27.575
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.6431 54.3271 32.3627 22.4316 4.1493

CAGE analysis