Hb_006586_010

Information

Type -
Description -
Location Contig6586: 1998-5219
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006586_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_000368_080 0.2689787115 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
3 Hb_001966_010 0.2858842971 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
4 Hb_007757_140 0.2949918171 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
5 Hb_004195_250 0.3081336648 - - hypothetical protein PRUPE_ppa015658mg [Prunus persica]
6 Hb_001190_090 0.3234369636 - - PREDICTED: uncharacterized protein LOC105638813 [Jatropha curcas]
7 Hb_002118_040 0.3263188871 - - PREDICTED: uncharacterized protein LOC104727990 [Camelina sativa]
8 Hb_103604_010 0.3436176308 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
9 Hb_030458_010 0.3443384418 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_000892_070 0.3457906475 - - PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Jatropha curcas]
11 Hb_000802_120 0.351783416 - - -
12 Hb_002028_060 0.359525631 - - -
13 Hb_165666_010 0.3599872688 - - -
14 Hb_000249_120 0.3608714649 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
15 Hb_006573_180 0.3685799768 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
16 Hb_008505_020 0.379373114 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
17 Hb_033835_020 0.379374715 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_005531_010 0.3794545801 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
19 Hb_001741_130 0.3797739828 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
20 Hb_163268_010 0.3797810126 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]

Gene co-expression network

sample Hb_006586_010 Hb_006586_010 Hb_000368_080 Hb_000368_080 Hb_006586_010--Hb_000368_080 Hb_001966_010 Hb_001966_010 Hb_006586_010--Hb_001966_010 Hb_007757_140 Hb_007757_140 Hb_006586_010--Hb_007757_140 Hb_004195_250 Hb_004195_250 Hb_006586_010--Hb_004195_250 Hb_001190_090 Hb_001190_090 Hb_006586_010--Hb_001190_090 Hb_002118_040 Hb_002118_040 Hb_006586_010--Hb_002118_040 Hb_000368_080--Hb_004195_250 Hb_165666_010 Hb_165666_010 Hb_000368_080--Hb_165666_010 Hb_003688_080 Hb_003688_080 Hb_000368_080--Hb_003688_080 Hb_148850_010 Hb_148850_010 Hb_000368_080--Hb_148850_010 Hb_000368_080--Hb_001966_010 Hb_001966_010--Hb_148850_010 Hb_002382_030 Hb_002382_030 Hb_001966_010--Hb_002382_030 Hb_128558_010 Hb_128558_010 Hb_001966_010--Hb_128558_010 Hb_000340_440 Hb_000340_440 Hb_001966_010--Hb_000340_440 Hb_000892_070 Hb_000892_070 Hb_007757_140--Hb_000892_070 Hb_008438_010 Hb_008438_010 Hb_007757_140--Hb_008438_010 Hb_001477_150 Hb_001477_150 Hb_007757_140--Hb_001477_150 Hb_080749_010 Hb_080749_010 Hb_007757_140--Hb_080749_010 Hb_001951_250 Hb_001951_250 Hb_007757_140--Hb_001951_250 Hb_004195_250--Hb_165666_010 Hb_148122_010 Hb_148122_010 Hb_004195_250--Hb_148122_010 Hb_000483_420 Hb_000483_420 Hb_004195_250--Hb_000483_420 Hb_004460_010 Hb_004460_010 Hb_004195_250--Hb_004460_010 Hb_001190_090--Hb_002118_040 Hb_004757_030 Hb_004757_030 Hb_001190_090--Hb_004757_030 Hb_005078_030 Hb_005078_030 Hb_001190_090--Hb_005078_030 Hb_002357_050 Hb_002357_050 Hb_001190_090--Hb_002357_050 Hb_006938_070 Hb_006938_070 Hb_001190_090--Hb_006938_070 Hb_001318_090 Hb_001318_090 Hb_001190_090--Hb_001318_090 Hb_000042_190 Hb_000042_190 Hb_002118_040--Hb_000042_190 Hb_000733_130 Hb_000733_130 Hb_002118_040--Hb_000733_130 Hb_103604_010 Hb_103604_010 Hb_002118_040--Hb_103604_010 Hb_052983_010 Hb_052983_010 Hb_002118_040--Hb_052983_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00682357 0.00561812 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0121794 0.0232737 0 0

CAGE analysis