Hb_006586_020

Information

Type -
Description -
Location Contig6586: 13185-14331
Sequence    

Annotation

kegg
ID bvg:104907934
description uncharacterized LOC104907934
nr
ID CCA66188.1
description hypothetical protein [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID F4NCL3
description Putative uncharacterized protein OS=Beta vulgaris subsp. vulgaris PE=4 SV=1
Gene Ontology
ID GO:0003824
description endonuclease exonuclease phosphatase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006586_020 0.0 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
2 Hb_101778_020 0.0042918736 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
3 Hb_000123_320 0.0073466655 - - PREDICTED: MADS-box protein FLOWERING LOCUS C-like [Jatropha curcas]
4 Hb_003430_010 0.0088487106 - - xyloglucan endotransglucosylase/hydrolase protein 33 precursor [Populus trichocarpa]
5 Hb_011924_010 0.011185265 - - hypothetical protein, partial [Phaeodactylibacter xiamenensis]
6 Hb_003392_020 0.0154189212 - - PREDICTED: uncharacterized protein LOC105650609 [Jatropha curcas]
7 Hb_006011_060 0.0161025509 - - -
8 Hb_068447_010 0.0238883442 - - protein with unknown function [Ricinus communis]
9 Hb_008248_010 0.0239430852 - - -
10 Hb_007676_070 0.0275882903 - - PREDICTED: omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 1-like [Populus euphratica]
11 Hb_000764_060 0.0290540365 - - PREDICTED: uncharacterized protein LOC101491058 [Cicer arietinum]
12 Hb_185340_020 0.0317607151 - - -
13 Hb_007259_030 0.0320435004 - - -
14 Hb_000756_040 0.0331281238 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
15 Hb_008078_040 0.0344941427 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
16 Hb_005204_030 0.0386809757 - - PREDICTED: L-type lectin-domain containing receptor kinase IX.1-like [Jatropha curcas]
17 Hb_001271_040 0.0416345541 - - hypothetical protein POPTR_0019s039903g, partial [Populus trichocarpa]
18 Hb_001104_260 0.0487311818 - - hypothetical protein JCGZ_23628 [Jatropha curcas]
19 Hb_001403_100 0.0491788983 - - hypothetical protein CICLE_v10017457mg, partial [Citrus clementina]
20 Hb_004829_050 0.0569333117 - - hypothetical protein TRIUR3_09654 [Triticum urartu]

Gene co-expression network

sample Hb_006586_020 Hb_006586_020 Hb_101778_020 Hb_101778_020 Hb_006586_020--Hb_101778_020 Hb_000123_320 Hb_000123_320 Hb_006586_020--Hb_000123_320 Hb_003430_010 Hb_003430_010 Hb_006586_020--Hb_003430_010 Hb_011924_010 Hb_011924_010 Hb_006586_020--Hb_011924_010 Hb_003392_020 Hb_003392_020 Hb_006586_020--Hb_003392_020 Hb_006011_060 Hb_006011_060 Hb_006586_020--Hb_006011_060 Hb_101778_020--Hb_011924_010 Hb_101778_020--Hb_000123_320 Hb_101778_020--Hb_003430_010 Hb_068447_010 Hb_068447_010 Hb_101778_020--Hb_068447_010 Hb_101778_020--Hb_003392_020 Hb_000123_320--Hb_003430_010 Hb_000123_320--Hb_003392_020 Hb_000123_320--Hb_006011_060 Hb_008248_010 Hb_008248_010 Hb_000123_320--Hb_008248_010 Hb_003430_010--Hb_003392_020 Hb_003430_010--Hb_006011_060 Hb_003430_010--Hb_008248_010 Hb_011924_010--Hb_068447_010 Hb_007676_070 Hb_007676_070 Hb_011924_010--Hb_007676_070 Hb_000764_060 Hb_000764_060 Hb_011924_010--Hb_000764_060 Hb_011924_010--Hb_000123_320 Hb_003392_020--Hb_006011_060 Hb_003392_020--Hb_008248_010 Hb_185340_020 Hb_185340_020 Hb_003392_020--Hb_185340_020 Hb_006011_060--Hb_008248_010 Hb_006011_060--Hb_185340_020 Hb_007259_030 Hb_007259_030 Hb_006011_060--Hb_007259_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.300675 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0599895 0

CAGE analysis