Hb_006586_040

Information

Type -
Description -
Location Contig6586: 32842-33579
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11750g
description POPTRDRAFT_660914; hypothetical protein
nr
ID XP_002317485.2
description hypothetical protein POPTR_0011s11750g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HZS3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s11750g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006586_040 0.0 - - hypothetical protein POPTR_0011s11750g [Populus trichocarpa]
2 Hb_000418_120 0.1022511813 - - PREDICTED: glucan endo-1,3-beta-glucosidase [Jatropha curcas]
3 Hb_002874_200 0.1063074164 - - PREDICTED: uncharacterized protein LOC105109832 [Populus euphratica]
4 Hb_001369_190 0.1139325499 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
5 Hb_000849_030 0.1150677968 - - PREDICTED: fimbrin-2 [Jatropha curcas]
6 Hb_001408_080 0.1190108797 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 [Jatropha curcas]
7 Hb_009785_030 0.1199755457 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
8 Hb_000261_070 0.1211235361 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like [Jatropha curcas]
9 Hb_009736_020 0.1240071849 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
10 Hb_001110_060 0.1270187453 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
11 Hb_002918_270 0.127295239 - - PREDICTED: protein E6-like [Populus euphratica]
12 Hb_005215_050 0.1280627343 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g37250 [Jatropha curcas]
13 Hb_003466_010 0.1295878533 - - PREDICTED: protein NRT1/ PTR FAMILY 2.11-like [Jatropha curcas]
14 Hb_002388_070 0.1298137342 - - ring finger protein, putative [Ricinus communis]
15 Hb_036520_030 0.1302965103 - - PREDICTED: uncharacterized protein LOC105638098 [Jatropha curcas]
16 Hb_000395_310 0.1331101347 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
17 Hb_000012_350 0.1335741474 transcription factor TF Family: HB PREDICTED: homeobox protein ATH1 [Jatropha curcas]
18 Hb_000922_050 0.1344390074 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]
19 Hb_000680_060 0.1347782026 - - hypothetical protein POPTR_0001s20790g [Populus trichocarpa]
20 Hb_000230_410 0.1351669739 - - PREDICTED: uncharacterized protein LOC105631891 [Jatropha curcas]

Gene co-expression network

sample Hb_006586_040 Hb_006586_040 Hb_000418_120 Hb_000418_120 Hb_006586_040--Hb_000418_120 Hb_002874_200 Hb_002874_200 Hb_006586_040--Hb_002874_200 Hb_001369_190 Hb_001369_190 Hb_006586_040--Hb_001369_190 Hb_000849_030 Hb_000849_030 Hb_006586_040--Hb_000849_030 Hb_001408_080 Hb_001408_080 Hb_006586_040--Hb_001408_080 Hb_009785_030 Hb_009785_030 Hb_006586_040--Hb_009785_030 Hb_001339_030 Hb_001339_030 Hb_000418_120--Hb_001339_030 Hb_004558_060 Hb_004558_060 Hb_000418_120--Hb_004558_060 Hb_035995_010 Hb_035995_010 Hb_000418_120--Hb_035995_010 Hb_000418_120--Hb_000849_030 Hb_000418_120--Hb_009785_030 Hb_000230_410 Hb_000230_410 Hb_002874_200--Hb_000230_410 Hb_002388_070 Hb_002388_070 Hb_002874_200--Hb_002388_070 Hb_004032_290 Hb_004032_290 Hb_002874_200--Hb_004032_290 Hb_000395_310 Hb_000395_310 Hb_002874_200--Hb_000395_310 Hb_007185_050 Hb_007185_050 Hb_002874_200--Hb_007185_050 Hb_001136_040 Hb_001136_040 Hb_002874_200--Hb_001136_040 Hb_001369_190--Hb_004558_060 Hb_006088_020 Hb_006088_020 Hb_001369_190--Hb_006088_020 Hb_002918_270 Hb_002918_270 Hb_001369_190--Hb_002918_270 Hb_003607_080 Hb_003607_080 Hb_001369_190--Hb_003607_080 Hb_005215_050 Hb_005215_050 Hb_001369_190--Hb_005215_050 Hb_001369_190--Hb_000849_030 Hb_000849_030--Hb_001408_080 Hb_003466_010 Hb_003466_010 Hb_000849_030--Hb_003466_010 Hb_036520_030 Hb_036520_030 Hb_000849_030--Hb_036520_030 Hb_122951_010 Hb_122951_010 Hb_000849_030--Hb_122951_010 Hb_001427_100 Hb_001427_100 Hb_000849_030--Hb_001427_100 Hb_103225_030 Hb_103225_030 Hb_000849_030--Hb_103225_030 Hb_001110_060 Hb_001110_060 Hb_001408_080--Hb_001110_060 Hb_001408_080--Hb_001427_100 Hb_005111_020 Hb_005111_020 Hb_001408_080--Hb_005111_020 Hb_012132_050 Hb_012132_050 Hb_001408_080--Hb_012132_050 Hb_001408_080--Hb_036520_030 Hb_000345_550 Hb_000345_550 Hb_009785_030--Hb_000345_550 Hb_009783_010 Hb_009783_010 Hb_009785_030--Hb_009783_010 Hb_000012_350 Hb_000012_350 Hb_009785_030--Hb_000012_350 Hb_009785_030--Hb_002874_200 Hb_007904_280 Hb_007904_280 Hb_009785_030--Hb_007904_280 Hb_009785_030--Hb_012132_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0410851 0.132179 0.279857 0.833806 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0240093 0.2354

CAGE analysis