Hb_006586_050

Information

Type -
Description -
Location Contig6586: 36574-41358
Sequence    

Annotation

kegg
ID rcu:RCOM_0201140
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012076525.1
description PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
swissprot
ID Q9LDA7
description Probable protein phosphatase 2C 39 OS=Arabidopsis thaliana GN=At3g15260 PE=2 SV=1
trembl
ID A0A067LN49
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15323 PE=4 SV=1
Gene Ontology
ID GO:0004721
description probable protein phosphatase 2c 39

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52860: 36575-41449 , PASA_asmbl_52861: 40256-40541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006586_050 0.0 - - PREDICTED: probable protein phosphatase 2C 39 [Jatropha curcas]
2 Hb_000523_040 0.0627749784 - - PREDICTED: auxin response factor 8 isoform X1 [Jatropha curcas]
3 Hb_000510_310 0.0734251556 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
4 Hb_000059_210 0.0743066012 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000521_260 0.0748473821 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
6 Hb_000032_320 0.0770416071 - - protein binding protein, putative [Ricinus communis]
7 Hb_164010_060 0.0773336519 - - PREDICTED: uncharacterized protein LOC105633115 [Jatropha curcas]
8 Hb_003935_030 0.0779681636 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
9 Hb_002304_090 0.0788979664 - - PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform X1 [Jatropha curcas]
10 Hb_000291_190 0.0812424548 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
11 Hb_005993_020 0.081678424 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
12 Hb_001252_010 0.0825076616 - - hypothetical protein JCGZ_01389 [Jatropha curcas]
13 Hb_005532_050 0.0830843753 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
14 Hb_000645_120 0.08317826 - - PREDICTED: ubiquitin-conjugating enzyme E2 32 [Jatropha curcas]
15 Hb_007188_070 0.0836111809 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
16 Hb_001680_010 0.0838790684 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
17 Hb_000538_100 0.0845325143 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000487_290 0.0846845339 - - ribonucleic acid binding protein S1, putative [Ricinus communis]
19 Hb_001172_010 0.0847521374 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
20 Hb_003747_010 0.085112232 - - hypothetical protein JCGZ_24080 [Jatropha curcas]

Gene co-expression network

sample Hb_006586_050 Hb_006586_050 Hb_000523_040 Hb_000523_040 Hb_006586_050--Hb_000523_040 Hb_000510_310 Hb_000510_310 Hb_006586_050--Hb_000510_310 Hb_000059_210 Hb_000059_210 Hb_006586_050--Hb_000059_210 Hb_000521_260 Hb_000521_260 Hb_006586_050--Hb_000521_260 Hb_000032_320 Hb_000032_320 Hb_006586_050--Hb_000032_320 Hb_164010_060 Hb_164010_060 Hb_006586_050--Hb_164010_060 Hb_000256_190 Hb_000256_190 Hb_000523_040--Hb_000256_190 Hb_080313_010 Hb_080313_010 Hb_000523_040--Hb_080313_010 Hb_000523_040--Hb_000521_260 Hb_000366_120 Hb_000366_120 Hb_000523_040--Hb_000366_120 Hb_002304_090 Hb_002304_090 Hb_000523_040--Hb_002304_090 Hb_006252_020 Hb_006252_020 Hb_000510_310--Hb_006252_020 Hb_000417_160 Hb_000417_160 Hb_000510_310--Hb_000417_160 Hb_000046_010 Hb_000046_010 Hb_000510_310--Hb_000046_010 Hb_000567_010 Hb_000567_010 Hb_000510_310--Hb_000567_010 Hb_000107_500 Hb_000107_500 Hb_000510_310--Hb_000107_500 Hb_000645_120 Hb_000645_120 Hb_000510_310--Hb_000645_120 Hb_001936_020 Hb_001936_020 Hb_000059_210--Hb_001936_020 Hb_156850_030 Hb_156850_030 Hb_000059_210--Hb_156850_030 Hb_000291_190 Hb_000291_190 Hb_000059_210--Hb_000291_190 Hb_033152_080 Hb_033152_080 Hb_000059_210--Hb_033152_080 Hb_004734_060 Hb_004734_060 Hb_000059_210--Hb_004734_060 Hb_075481_030 Hb_075481_030 Hb_000521_260--Hb_075481_030 Hb_000768_110 Hb_000768_110 Hb_000521_260--Hb_000768_110 Hb_000521_260--Hb_000510_310 Hb_008511_030 Hb_008511_030 Hb_000521_260--Hb_008511_030 Hb_000976_320 Hb_000976_320 Hb_000521_260--Hb_000976_320 Hb_000032_320--Hb_156850_030 Hb_001728_100 Hb_001728_100 Hb_000032_320--Hb_001728_100 Hb_002301_220 Hb_002301_220 Hb_000032_320--Hb_002301_220 Hb_001541_020 Hb_001541_020 Hb_000032_320--Hb_001541_020 Hb_022408_010 Hb_022408_010 Hb_000032_320--Hb_022408_010 Hb_003020_110 Hb_003020_110 Hb_164010_060--Hb_003020_110 Hb_004586_180 Hb_004586_180 Hb_164010_060--Hb_004586_180 Hb_007590_080 Hb_007590_080 Hb_164010_060--Hb_007590_080 Hb_007632_020 Hb_007632_020 Hb_164010_060--Hb_007632_020 Hb_063716_080 Hb_063716_080 Hb_164010_060--Hb_063716_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.2012 43.7286 19.4983 27.4337 52.511 53.5179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.272 25.3296 34.6782 34.1818 10.1451

CAGE analysis