Hb_006586_060

Information

Type transcription factor
Description TF Family: SBP
Location Contig6586: 42882-44673
Sequence    

Annotation

kegg
ID rcu:RCOM_0201150
description Squamosa promoter-binding protein, putative
nr
ID XP_002533086.1
description Squamosa promoter-binding protein, putative [Ricinus communis]
swissprot
ID Q9S7A9
description Squamosa promoter-binding-like protein 4 OS=Arabidopsis thaliana GN=SPL4 PE=1 SV=1
trembl
ID B9T4B7
description Squamosa promoter-binding protein, putative OS=Ricinus communis GN=RCOM_0201150 PE=4 SV=1
Gene Ontology
ID GO:0005634
description squamosa promoter-binding protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52863: 43057-44575
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006586_060 0.0 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
2 Hb_102129_040 0.0206655843 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
3 Hb_000751_010 0.0424753831 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000735_190 0.046077078 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
5 Hb_000167_150 0.0478523899 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
6 Hb_000136_120 0.0546268106 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
7 Hb_001221_550 0.0561598942 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
8 Hb_001329_060 0.0581874543 - - Polygalacturonase precursor, putative [Ricinus communis]
9 Hb_000160_260 0.0585650757 - - nutrient reservoir, putative [Ricinus communis]
10 Hb_102900_010 0.0607537523 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
11 Hb_006594_030 0.0642696292 - - -
12 Hb_003411_070 0.0707006991 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
13 Hb_000130_340 0.0723743015 - - -
14 Hb_001946_070 0.075281112 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
15 Hb_001671_070 0.0755780254 - - kinase, putative [Ricinus communis]
16 Hb_031862_190 0.0757288655 - - -
17 Hb_003592_040 0.0775413757 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
18 Hb_002893_220 0.0782845805 - - hypothetical protein B456_001G004300 [Gossypium raimondii]
19 Hb_000496_100 0.0858971125 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
20 Hb_010737_030 0.0872267465 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_006586_060 Hb_006586_060 Hb_102129_040 Hb_102129_040 Hb_006586_060--Hb_102129_040 Hb_000751_010 Hb_000751_010 Hb_006586_060--Hb_000751_010 Hb_000735_190 Hb_000735_190 Hb_006586_060--Hb_000735_190 Hb_000167_150 Hb_000167_150 Hb_006586_060--Hb_000167_150 Hb_000136_120 Hb_000136_120 Hb_006586_060--Hb_000136_120 Hb_001221_550 Hb_001221_550 Hb_006586_060--Hb_001221_550 Hb_102129_040--Hb_000751_010 Hb_102900_010 Hb_102900_010 Hb_102129_040--Hb_102900_010 Hb_001329_060 Hb_001329_060 Hb_102129_040--Hb_001329_060 Hb_102129_040--Hb_000735_190 Hb_102129_040--Hb_000167_150 Hb_000751_010--Hb_102900_010 Hb_031862_190 Hb_031862_190 Hb_000751_010--Hb_031862_190 Hb_000751_010--Hb_001329_060 Hb_003411_070 Hb_003411_070 Hb_000751_010--Hb_003411_070 Hb_000160_260 Hb_000160_260 Hb_000735_190--Hb_000160_260 Hb_000735_190--Hb_003411_070 Hb_000735_190--Hb_000751_010 Hb_000735_190--Hb_000167_150 Hb_000167_150--Hb_000136_120 Hb_006594_030 Hb_006594_030 Hb_000167_150--Hb_006594_030 Hb_001946_070 Hb_001946_070 Hb_000167_150--Hb_001946_070 Hb_000167_150--Hb_001329_060 Hb_025048_050 Hb_025048_050 Hb_000167_150--Hb_025048_050 Hb_000136_120--Hb_006594_030 Hb_000136_120--Hb_001946_070 Hb_001153_170 Hb_001153_170 Hb_000136_120--Hb_001153_170 Hb_000136_120--Hb_025048_050 Hb_089140_130 Hb_089140_130 Hb_000136_120--Hb_089140_130 Hb_002893_220 Hb_002893_220 Hb_001221_550--Hb_002893_220 Hb_000130_340 Hb_000130_340 Hb_001221_550--Hb_000130_340 Hb_001221_550--Hb_000735_190 Hb_003592_040 Hb_003592_040 Hb_001221_550--Hb_003592_040 Hb_001221_550--Hb_102129_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 5.55805 1.18366 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 1.58839

CAGE analysis