Hb_006588_010

Information

Type -
Description -
Location Contig6588: 2100-3975
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_010 0.0 - - -
2 Hb_012163_030 0.2326907854 - - PREDICTED: uncharacterized protein LOC105647861 [Jatropha curcas]
3 Hb_002615_100 0.2405459351 - - -
4 Hb_001427_140 0.2408521334 - - PREDICTED: probable phospholipase A2 homolog 1 [Jatropha curcas]
5 Hb_006922_040 0.2468366799 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
6 Hb_002228_090 0.2468761057 - - hypothetical protein POPTR_0006s23560g [Populus trichocarpa]
7 Hb_001186_080 0.2500379326 - - PREDICTED: F-box protein FBW2-like [Nelumbo nucifera]
8 Hb_081207_010 0.2574697287 - - hypothetical protein JCGZ_17195 [Jatropha curcas]
9 Hb_002240_080 0.2583505855 - - -
10 Hb_000184_190 0.2643501969 - - hypothetical protein VITISV_016970 [Vitis vinifera]
11 Hb_000445_220 0.2680811276 - - -
12 Hb_000804_030 0.2706823537 - - Protein C14orf111, putative [Ricinus communis]
13 Hb_001348_110 0.2744878071 - - PREDICTED: esterase-like [Jatropha curcas]
14 Hb_009954_050 0.2793990639 - - PREDICTED: uncharacterized protein LOC104611877 isoform X2 [Nelumbo nucifera]
15 Hb_008954_010 0.279826123 - - -
16 Hb_001140_240 0.2810540961 - - metal ion binding protein, putative [Ricinus communis]
17 Hb_153216_010 0.2825556632 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
18 Hb_001017_080 0.2840795916 - - hypothetical protein POPTR_0010s06020g [Populus trichocarpa]
19 Hb_001101_010 0.2872844813 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
20 Hb_005222_020 0.3015141806 - - hypothetical protein [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_006588_010 Hb_006588_010 Hb_012163_030 Hb_012163_030 Hb_006588_010--Hb_012163_030 Hb_002615_100 Hb_002615_100 Hb_006588_010--Hb_002615_100 Hb_001427_140 Hb_001427_140 Hb_006588_010--Hb_001427_140 Hb_006922_040 Hb_006922_040 Hb_006588_010--Hb_006922_040 Hb_002228_090 Hb_002228_090 Hb_006588_010--Hb_002228_090 Hb_001186_080 Hb_001186_080 Hb_006588_010--Hb_001186_080 Hb_000613_150 Hb_000613_150 Hb_012163_030--Hb_000613_150 Hb_000317_530 Hb_000317_530 Hb_012163_030--Hb_000317_530 Hb_008954_010 Hb_008954_010 Hb_012163_030--Hb_008954_010 Hb_001348_110 Hb_001348_110 Hb_012163_030--Hb_001348_110 Hb_000804_030 Hb_000804_030 Hb_012163_030--Hb_000804_030 Hb_002240_080 Hb_002240_080 Hb_002615_100--Hb_002240_080 Hb_175450_010 Hb_175450_010 Hb_002615_100--Hb_175450_010 Hb_002615_100--Hb_002228_090 Hb_081207_010 Hb_081207_010 Hb_002615_100--Hb_081207_010 Hb_002259_050 Hb_002259_050 Hb_002615_100--Hb_002259_050 Hb_115326_010 Hb_115326_010 Hb_001427_140--Hb_115326_010 Hb_000282_140 Hb_000282_140 Hb_001427_140--Hb_000282_140 Hb_001427_140--Hb_081207_010 Hb_001427_140--Hb_002228_090 Hb_001427_140--Hb_175450_010 Hb_000445_220 Hb_000445_220 Hb_006922_040--Hb_000445_220 Hb_006922_040--Hb_081207_010 Hb_000501_020 Hb_000501_020 Hb_006922_040--Hb_000501_020 Hb_006922_040--Hb_002259_050 Hb_006922_040--Hb_002228_090 Hb_000184_190 Hb_000184_190 Hb_006922_040--Hb_000184_190 Hb_002228_090--Hb_081207_010 Hb_002228_090--Hb_175450_010 Hb_002228_090--Hb_000184_190 Hb_002228_090--Hb_000445_220 Hb_002228_090--Hb_002259_050 Hb_000792_120 Hb_000792_120 Hb_001186_080--Hb_000792_120 Hb_168711_010 Hb_168711_010 Hb_001186_080--Hb_168711_010 Hb_000032_350 Hb_000032_350 Hb_001186_080--Hb_000032_350 Hb_000300_210 Hb_000300_210 Hb_001186_080--Hb_000300_210 Hb_001101_010 Hb_001101_010 Hb_001186_080--Hb_001101_010 Hb_004931_010 Hb_004931_010 Hb_001186_080--Hb_004931_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0772532 0 0.0464295 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.282328 0.443575 0 0.0462376 0

CAGE analysis