Hb_006588_080

Information

Type -
Description -
Location Contig6588: 56978-60881
Sequence    

Annotation

kegg
ID tcc:TCM_008183
description Nuclear fusion defective 6 isoform 1
nr
ID KDP24089.1
description hypothetical protein JCGZ_25746 [Jatropha curcas]
swissprot
ID Q93ZJ3
description Protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=NFD6 PE=2 SV=1
trembl
ID A0A067JX26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25746 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52877: 57085-60911 , PASA_asmbl_52878: 57085-59559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_080 0.0 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
2 Hb_004735_050 0.0532992164 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
3 Hb_000878_020 0.0709779881 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
4 Hb_000635_080 0.0766583349 - - 60S ribosomal protein L17A [Hevea brasiliensis]
5 Hb_120823_010 0.0766933807 - - -
6 Hb_002316_120 0.079486952 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
7 Hb_000172_420 0.0796022993 - - 60S ribosomal protein L30, putative [Ricinus communis]
8 Hb_011377_020 0.0822781813 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
9 Hb_001780_050 0.0834228859 - - PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC2 [Jatropha curcas]
10 Hb_000915_120 0.0835265911 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
11 Hb_004007_180 0.0841338437 - - PREDICTED: uncharacterized protein LOC105639838 [Jatropha curcas]
12 Hb_012395_130 0.0848505559 - - Os02g0814700 [Oryza sativa Japonica Group]
13 Hb_000300_390 0.0852586285 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
14 Hb_000789_110 0.0901738089 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
15 Hb_002248_100 0.0912708525 - - hypothetical protein VITISV_027197 [Vitis vinifera]
16 Hb_000110_170 0.0922956345 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
17 Hb_008948_050 0.0943829577 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
18 Hb_000062_390 0.094419884 - - PREDICTED: protein Iojap-related, mitochondrial [Jatropha curcas]
19 Hb_001386_050 0.0963992777 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
20 Hb_000454_180 0.0969429564 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]

Gene co-expression network

sample Hb_006588_080 Hb_006588_080 Hb_004735_050 Hb_004735_050 Hb_006588_080--Hb_004735_050 Hb_000878_020 Hb_000878_020 Hb_006588_080--Hb_000878_020 Hb_000635_080 Hb_000635_080 Hb_006588_080--Hb_000635_080 Hb_120823_010 Hb_120823_010 Hb_006588_080--Hb_120823_010 Hb_002316_120 Hb_002316_120 Hb_006588_080--Hb_002316_120 Hb_000172_420 Hb_000172_420 Hb_006588_080--Hb_000172_420 Hb_004007_180 Hb_004007_180 Hb_004735_050--Hb_004007_180 Hb_004735_050--Hb_000635_080 Hb_004735_050--Hb_000878_020 Hb_004735_050--Hb_002316_120 Hb_008748_020 Hb_008748_020 Hb_004735_050--Hb_008748_020 Hb_000110_170 Hb_000110_170 Hb_000878_020--Hb_000110_170 Hb_001386_050 Hb_001386_050 Hb_000878_020--Hb_001386_050 Hb_008948_050 Hb_008948_050 Hb_000878_020--Hb_008948_050 Hb_002344_070 Hb_002344_070 Hb_000878_020--Hb_002344_070 Hb_000915_120 Hb_000915_120 Hb_000878_020--Hb_000915_120 Hb_001377_380 Hb_001377_380 Hb_000635_080--Hb_001377_380 Hb_000780_210 Hb_000780_210 Hb_000635_080--Hb_000780_210 Hb_002248_100 Hb_002248_100 Hb_000635_080--Hb_002248_100 Hb_004545_130 Hb_004545_130 Hb_000635_080--Hb_004545_130 Hb_000635_080--Hb_002316_120 Hb_000300_390 Hb_000300_390 Hb_120823_010--Hb_000300_390 Hb_000389_080 Hb_000389_080 Hb_120823_010--Hb_000389_080 Hb_120823_010--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_120823_010--Hb_012539_020 Hb_000062_390 Hb_000062_390 Hb_120823_010--Hb_000062_390 Hb_000789_110 Hb_000789_110 Hb_002316_120--Hb_000789_110 Hb_002316_120--Hb_000300_390 Hb_000270_720 Hb_000270_720 Hb_002316_120--Hb_000270_720 Hb_002316_120--Hb_001377_380 Hb_002316_120--Hb_012539_020 Hb_002316_120--Hb_004007_180 Hb_000172_420--Hb_002248_100 Hb_000172_420--Hb_000062_390 Hb_000172_420--Hb_000635_080 Hb_000172_420--Hb_000270_720 Hb_000172_420--Hb_008948_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.01656 2.38459 4.59141 7.98011 3.66081 6.05569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.226 50.8314 14.4043 7.8884 3.35546

CAGE analysis