Hb_006588_090

Information

Type -
Description -
Location Contig6588: 61464-63640
Sequence    

Annotation

kegg
ID rcu:RCOM_1173010
description hypothetical protein
nr
ID XP_012088229.1
description PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
swissprot
ID O49453
description Uncharacterized protein At4g28440 OS=Arabidopsis thaliana GN=At4g28440 PE=1 SV=1
trembl
ID A0A067JVS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25747 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna-binding family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52879: 61631-63494
cDNA
(Sanger)
(ID:Location)		 009_A12.ab1: 61631-63494

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_090 0.0 - - PREDICTED: uncharacterized protein At4g28440 [Jatropha curcas]
2 Hb_000465_310 0.0997649021 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005333_020 0.1022216166 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
4 Hb_183510_010 0.1093667787 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
5 Hb_007416_200 0.1170163005 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
6 Hb_001720_010 0.1214712134 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
7 Hb_025048_030 0.12167952 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
8 Hb_005144_040 0.1247733989 - - PREDICTED: protein N-lysine methyltransferase METTL21A [Jatropha curcas]
9 Hb_000174_200 0.1252351438 - - PREDICTED: pre-mRNA-splicing factor 38 [Jatropha curcas]
10 Hb_010298_020 0.1276409067 - - PREDICTED: uncharacterized protein At2g02148 isoform X4 [Vitis vinifera]
11 Hb_000093_130 0.1284371416 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
12 Hb_001195_100 0.1291298775 - - PREDICTED: uncharacterized protein LOC105633812 [Jatropha curcas]
13 Hb_002977_010 0.1316789817 - - PREDICTED: F-box protein GID2 [Jatropha curcas]
14 Hb_000322_170 0.1325681564 - - PREDICTED: nucleosome assembly protein 1;3 [Jatropha curcas]
15 Hb_004109_060 0.1333792797 - - hypothetical protein POPTR_0019s12520g [Populus trichocarpa]
16 Hb_000684_300 0.1340357147 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]
17 Hb_009355_030 0.1354803843 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003106_150 0.1370984309 - - PREDICTED: U-box domain-containing protein 38-like [Jatropha curcas]
19 Hb_000264_060 0.1380464643 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
20 Hb_006316_070 0.1384356737 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_006588_090 Hb_006588_090 Hb_000465_310 Hb_000465_310 Hb_006588_090--Hb_000465_310 Hb_005333_020 Hb_005333_020 Hb_006588_090--Hb_005333_020 Hb_183510_010 Hb_183510_010 Hb_006588_090--Hb_183510_010 Hb_007416_200 Hb_007416_200 Hb_006588_090--Hb_007416_200 Hb_001720_010 Hb_001720_010 Hb_006588_090--Hb_001720_010 Hb_025048_030 Hb_025048_030 Hb_006588_090--Hb_025048_030 Hb_000465_310--Hb_005333_020 Hb_000174_200 Hb_000174_200 Hb_000465_310--Hb_000174_200 Hb_005144_040 Hb_005144_040 Hb_000465_310--Hb_005144_040 Hb_003878_140 Hb_003878_140 Hb_000465_310--Hb_003878_140 Hb_002977_010 Hb_002977_010 Hb_000465_310--Hb_002977_010 Hb_153150_010 Hb_153150_010 Hb_005333_020--Hb_153150_010 Hb_005147_110 Hb_005147_110 Hb_005333_020--Hb_005147_110 Hb_001975_070 Hb_001975_070 Hb_005333_020--Hb_001975_070 Hb_011930_010 Hb_011930_010 Hb_005333_020--Hb_011930_010 Hb_000640_210 Hb_000640_210 Hb_005333_020--Hb_000640_210 Hb_183510_010--Hb_000174_200 Hb_000076_290 Hb_000076_290 Hb_183510_010--Hb_000076_290 Hb_001178_060 Hb_001178_060 Hb_183510_010--Hb_001178_060 Hb_000322_170 Hb_000322_170 Hb_183510_010--Hb_000322_170 Hb_002002_020 Hb_002002_020 Hb_183510_010--Hb_002002_020 Hb_005038_020 Hb_005038_020 Hb_183510_010--Hb_005038_020 Hb_003813_200 Hb_003813_200 Hb_007416_200--Hb_003813_200 Hb_000093_130 Hb_000093_130 Hb_007416_200--Hb_000093_130 Hb_000684_300 Hb_000684_300 Hb_007416_200--Hb_000684_300 Hb_007416_200--Hb_005333_020 Hb_001956_050 Hb_001956_050 Hb_007416_200--Hb_001956_050 Hb_001288_080 Hb_001288_080 Hb_001720_010--Hb_001288_080 Hb_001610_110 Hb_001610_110 Hb_001720_010--Hb_001610_110 Hb_001623_140 Hb_001623_140 Hb_001720_010--Hb_001623_140 Hb_004324_340 Hb_004324_340 Hb_001720_010--Hb_004324_340 Hb_001168_040 Hb_001168_040 Hb_001720_010--Hb_001168_040 Hb_000244_300 Hb_000244_300 Hb_001720_010--Hb_000244_300 Hb_010298_020 Hb_010298_020 Hb_025048_030--Hb_010298_020 Hb_001195_100 Hb_001195_100 Hb_025048_030--Hb_001195_100 Hb_005271_070 Hb_005271_070 Hb_025048_030--Hb_005271_070 Hb_001348_140 Hb_001348_140 Hb_025048_030--Hb_001348_140 Hb_004232_010 Hb_004232_010 Hb_025048_030--Hb_004232_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
858.064 567.259 135.734 51.7597 486.225 704.356
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
311.693 317.823 149.672 96.4212 17.4894

CAGE analysis