Hb_006588_100

Information

Type -
Description -
Location Contig6588: 66041-68239
Sequence    

Annotation

kegg
ID rcu:RCOM_1173020
description hypothetical protein
nr
ID XP_002517867.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6DR04
description Reticulon-like protein B17 OS=Arabidopsis thaliana GN=RTNLB17 PE=2 SV=1
trembl
ID B9RVU8
description Reticulon-like protein OS=Ricinus communis GN=RCOM_1173020 PE=4 SV=1
Gene Ontology
ID GO:0005789
description reticulon family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52881: 65894-68103
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000480_060 0.0701791693 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
3 Hb_003656_080 0.0707877315 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
4 Hb_001699_270 0.078011406 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
5 Hb_001950_090 0.0813919331 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
6 Hb_000140_200 0.0817135723 - - PREDICTED: uncharacterized protein LOC105642928 [Jatropha curcas]
7 Hb_000345_450 0.0833720729 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
8 Hb_003847_060 0.0834305965 - - syntaxin, putative [Ricinus communis]
9 Hb_002686_320 0.087819517 - - syntaxin, putative [Ricinus communis]
10 Hb_000701_020 0.0900135671 - - PREDICTED: protein ENDOSPERM DEFECTIVE 1-like isoform X1 [Jatropha curcas]
11 Hb_005332_030 0.0916331331 - - conserved hypothetical protein [Ricinus communis]
12 Hb_020025_030 0.0954140093 transcription factor TF Family: PHD PREDICTED: protein Jade-1 [Populus euphratica]
13 Hb_000977_190 0.0954832948 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004592_030 0.0985429463 - - unknown [Lotus japonicus]
15 Hb_001263_030 0.0992151137 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
16 Hb_001307_150 0.1000844105 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_004531_060 0.1003936204 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
18 Hb_000030_080 0.1021761943 - - PREDICTED: uncharacterized protein LOC105632640 [Jatropha curcas]
19 Hb_000538_290 0.1057781357 - - hypothetical protein RCOM_0303940 [Ricinus communis]
20 Hb_005398_050 0.1076768468 - - PREDICTED: uncharacterized protein LOC105644215 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_006588_100 Hb_006588_100 Hb_000480_060 Hb_000480_060 Hb_006588_100--Hb_000480_060 Hb_003656_080 Hb_003656_080 Hb_006588_100--Hb_003656_080 Hb_001699_270 Hb_001699_270 Hb_006588_100--Hb_001699_270 Hb_001950_090 Hb_001950_090 Hb_006588_100--Hb_001950_090 Hb_000140_200 Hb_000140_200 Hb_006588_100--Hb_000140_200 Hb_000345_450 Hb_000345_450 Hb_006588_100--Hb_000345_450 Hb_001307_150 Hb_001307_150 Hb_000480_060--Hb_001307_150 Hb_009113_060 Hb_009113_060 Hb_000480_060--Hb_009113_060 Hb_000480_060--Hb_001699_270 Hb_000480_060--Hb_000345_450 Hb_000085_360 Hb_000085_360 Hb_000480_060--Hb_000085_360 Hb_004531_060 Hb_004531_060 Hb_003656_080--Hb_004531_060 Hb_005332_030 Hb_005332_030 Hb_003656_080--Hb_005332_030 Hb_020025_030 Hb_020025_030 Hb_003656_080--Hb_020025_030 Hb_003656_080--Hb_001950_090 Hb_003656_080--Hb_000140_200 Hb_000661_150 Hb_000661_150 Hb_001699_270--Hb_000661_150 Hb_001699_270--Hb_001307_150 Hb_001699_270--Hb_001950_090 Hb_003847_060 Hb_003847_060 Hb_001699_270--Hb_003847_060 Hb_001699_270--Hb_000345_450 Hb_001950_090--Hb_003847_060 Hb_001950_090--Hb_000345_450 Hb_000317_120 Hb_000317_120 Hb_001950_090--Hb_000317_120 Hb_000069_650 Hb_000069_650 Hb_001950_090--Hb_000069_650 Hb_000140_200--Hb_020025_030 Hb_000094_230 Hb_000094_230 Hb_000140_200--Hb_000094_230 Hb_001263_030 Hb_001263_030 Hb_000140_200--Hb_001263_030 Hb_000977_190 Hb_000977_190 Hb_000140_200--Hb_000977_190 Hb_000701_020 Hb_000701_020 Hb_000345_450--Hb_000701_020 Hb_000345_450--Hb_001307_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0658868 0.299589 28.7334 22.3192 0 0.0446061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.9641 1.5381

CAGE analysis