Hb_006588_140

Information

Type -
Description -
Location Contig6588: 89108-89980
Sequence    

Annotation

kegg
ID bvg:104906772
description uncharacterized LOC104906772
nr
ID XP_010693875.1
description PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
swissprot
ID -
description -
trembl
ID A0A061EV65
description Uncharacterized protein OS=Theobroma cacao GN=TCM_022640 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_140 0.0 - - PREDICTED: uncharacterized protein LOC104906772 [Beta vulgaris subsp. vulgaris]
2 Hb_126714_010 0.006667931 - - hypothetical protein CISIN_1g041016mg, partial [Citrus sinensis]
3 Hb_005833_010 0.0445981929 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46790, chloroplastic [Jatropha curcas]
4 Hb_009225_060 0.0656222312 - - PREDICTED: myosin heavy chain kinase B-like [Populus euphratica]
5 Hb_001426_020 0.0737505847 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
6 Hb_000358_260 0.0762685942 - - PREDICTED: lachrymatory-factor synthase-like [Vitis vinifera]
7 Hb_001534_130 0.0765431313 - - PREDICTED: serine carboxypeptidase-like 51 [Jatropha curcas]
8 Hb_004880_020 0.0780921392 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Jatropha curcas]
9 Hb_010577_020 0.0785300898 - - -
10 Hb_163566_010 0.0791205449 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP17-1, chloroplastic isoform X2 [Amborella trichopoda]
11 Hb_000487_080 0.0816441783 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
12 Hb_185811_010 0.0823338967 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
13 Hb_000915_170 0.0836776806 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
14 Hb_009233_020 0.0884709873 - - PREDICTED: 3-ketoacyl-CoA synthase 12 [Jatropha curcas]
15 Hb_001981_050 0.0887782111 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
16 Hb_056506_040 0.0897555366 - - -
17 Hb_189208_070 0.091783722 - - 10-deacetylbaccatin III 10-O-acetyltransferase, putative [Ricinus communis]
18 Hb_000077_020 0.0935553161 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000111_490 0.0941481885 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004807_010 0.0942603855 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]

Gene co-expression network

sample Hb_006588_140 Hb_006588_140 Hb_126714_010 Hb_126714_010 Hb_006588_140--Hb_126714_010 Hb_005833_010 Hb_005833_010 Hb_006588_140--Hb_005833_010 Hb_009225_060 Hb_009225_060 Hb_006588_140--Hb_009225_060 Hb_001426_020 Hb_001426_020 Hb_006588_140--Hb_001426_020 Hb_000358_260 Hb_000358_260 Hb_006588_140--Hb_000358_260 Hb_001534_130 Hb_001534_130 Hb_006588_140--Hb_001534_130 Hb_126714_010--Hb_005833_010 Hb_126714_010--Hb_009225_060 Hb_126714_010--Hb_001426_020 Hb_163566_010 Hb_163566_010 Hb_126714_010--Hb_163566_010 Hb_126714_010--Hb_000358_260 Hb_005833_010--Hb_163566_010 Hb_010577_020 Hb_010577_020 Hb_005833_010--Hb_010577_020 Hb_005833_010--Hb_000358_260 Hb_005833_010--Hb_001426_020 Hb_009233_020 Hb_009233_020 Hb_009225_060--Hb_009233_020 Hb_004880_020 Hb_004880_020 Hb_009225_060--Hb_004880_020 Hb_000077_020 Hb_000077_020 Hb_009225_060--Hb_000077_020 Hb_003734_070 Hb_003734_070 Hb_009225_060--Hb_003734_070 Hb_085682_010 Hb_085682_010 Hb_009225_060--Hb_085682_010 Hb_000487_080 Hb_000487_080 Hb_001426_020--Hb_000487_080 Hb_016734_100 Hb_016734_100 Hb_001426_020--Hb_016734_100 Hb_001642_020 Hb_001642_020 Hb_001426_020--Hb_001642_020 Hb_001031_140 Hb_001031_140 Hb_001426_020--Hb_001031_140 Hb_001426_020--Hb_163566_010 Hb_000358_260--Hb_010577_020 Hb_000915_170 Hb_000915_170 Hb_000358_260--Hb_000915_170 Hb_056506_040 Hb_056506_040 Hb_000358_260--Hb_056506_040 Hb_000928_030 Hb_000928_030 Hb_000358_260--Hb_000928_030 Hb_006816_380 Hb_006816_380 Hb_000358_260--Hb_006816_380 Hb_001534_130--Hb_005833_010 Hb_001534_130--Hb_126714_010 Hb_001534_130--Hb_000358_260 Hb_001534_130--Hb_010577_020 Hb_001534_130--Hb_056506_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.623169 0.794197 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.828605

CAGE analysis