Hb_006588_150

Information

Type -
Description -
Location Contig6588: 96983-97768
Sequence    

Annotation

kegg
ID rcu:RCOM_0085180
description 3-oxo-5-alpha-steroid 4-dehydrogenase, putative (EC:1.3.99.5)
nr
ID XP_012087922.1
description PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
swissprot
ID Q2QDF6
description Steroid 5-alpha-reductase DET2 OS=Gossypium hirsutum GN=DET2 PE=1 SV=1
trembl
ID A0A067JY64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25058 PE=4 SV=1
Gene Ontology
ID GO:0005737
description steroid 5-alpha-reductase det2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52883: 97065-97438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_150 0.0 - - PREDICTED: steroid 5-alpha-reductase DET2 [Jatropha curcas]
2 Hb_000740_110 0.1101419802 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_01850 [Jatropha curcas]
3 Hb_002876_290 0.1178188611 - - PREDICTED: uncharacterized protein LOC104446353 [Eucalyptus grandis]
4 Hb_001369_440 0.1194137969 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
5 Hb_003211_010 0.1209935637 - - PREDICTED: uncharacterized protein LOC105635705 [Jatropha curcas]
6 Hb_022400_010 0.124250992 - - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein [Theobroma cacao]
7 Hb_005214_090 0.1296619976 - - PREDICTED: uncharacterized protein LOC105636015 [Jatropha curcas]
8 Hb_000213_120 0.1335655232 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_000521_270 0.1345398262 - - PREDICTED: protein EMSY-LIKE 3 [Jatropha curcas]
10 Hb_000441_150 0.1366660936 - - PREDICTED: ferredoxin--NADP reductase, root-type isozyme, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_008143_070 0.1369778451 - - PREDICTED: factor of DNA methylation 4 [Jatropha curcas]
12 Hb_032808_030 0.1375528154 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
13 Hb_000227_060 0.1406500215 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
14 Hb_146109_010 0.1420751953 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002662_020 0.1427807193 - - PREDICTED: F-box protein At1g47056-like [Jatropha curcas]
16 Hb_011716_090 0.1428252627 transcription factor TF Family: HRT putative transciption factor family protein [Populus trichocarpa]
17 Hb_063480_020 0.1442778047 - - unnamed protein product [Vitis vinifera]
18 Hb_004143_040 0.1450730459 - - argininosuccinate lyase, putative [Ricinus communis]
19 Hb_000116_410 0.1467535506 - - hypothetical protein JCGZ_22416 [Jatropha curcas]
20 Hb_063716_080 0.1475365566 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]

Gene co-expression network

sample Hb_006588_150 Hb_006588_150 Hb_000740_110 Hb_000740_110 Hb_006588_150--Hb_000740_110 Hb_002876_290 Hb_002876_290 Hb_006588_150--Hb_002876_290 Hb_001369_440 Hb_001369_440 Hb_006588_150--Hb_001369_440 Hb_003211_010 Hb_003211_010 Hb_006588_150--Hb_003211_010 Hb_022400_010 Hb_022400_010 Hb_006588_150--Hb_022400_010 Hb_005214_090 Hb_005214_090 Hb_006588_150--Hb_005214_090 Hb_156850_070 Hb_156850_070 Hb_000740_110--Hb_156850_070 Hb_089140_030 Hb_089140_030 Hb_000740_110--Hb_089140_030 Hb_000976_040 Hb_000976_040 Hb_000740_110--Hb_000976_040 Hb_008143_070 Hb_008143_070 Hb_000740_110--Hb_008143_070 Hb_000740_110--Hb_005214_090 Hb_009476_140 Hb_009476_140 Hb_002876_290--Hb_009476_140 Hb_002876_290--Hb_003211_010 Hb_000025_340 Hb_000025_340 Hb_002876_290--Hb_000025_340 Hb_073395_010 Hb_073395_010 Hb_002876_290--Hb_073395_010 Hb_037767_010 Hb_037767_010 Hb_002876_290--Hb_037767_010 Hb_008177_030 Hb_008177_030 Hb_001369_440--Hb_008177_030 Hb_000441_150 Hb_000441_150 Hb_001369_440--Hb_000441_150 Hb_002667_060 Hb_002667_060 Hb_001369_440--Hb_002667_060 Hb_003747_010 Hb_003747_010 Hb_001369_440--Hb_003747_010 Hb_000640_120 Hb_000640_120 Hb_001369_440--Hb_000640_120 Hb_001055_030 Hb_001055_030 Hb_003211_010--Hb_001055_030 Hb_167234_010 Hb_167234_010 Hb_003211_010--Hb_167234_010 Hb_011716_090 Hb_011716_090 Hb_003211_010--Hb_011716_090 Hb_003211_010--Hb_008143_070 Hb_000856_180 Hb_000856_180 Hb_003211_010--Hb_000856_180 Hb_146109_010 Hb_146109_010 Hb_022400_010--Hb_146109_010 Hb_004602_040 Hb_004602_040 Hb_022400_010--Hb_004602_040 Hb_001900_110 Hb_001900_110 Hb_022400_010--Hb_001900_110 Hb_000592_090 Hb_000592_090 Hb_022400_010--Hb_000592_090 Hb_000136_060 Hb_000136_060 Hb_022400_010--Hb_000136_060 Hb_022400_010--Hb_000740_110 Hb_000856_310 Hb_000856_310 Hb_005214_090--Hb_000856_310 Hb_000244_220 Hb_000244_220 Hb_005214_090--Hb_000244_220 Hb_001575_010 Hb_001575_010 Hb_005214_090--Hb_001575_010 Hb_000627_180 Hb_000627_180 Hb_005214_090--Hb_000627_180 Hb_005214_090--Hb_156850_070 Hb_005214_090--Hb_089140_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.52161 11.7299 1.51584 6.62804 4.18774 11.8175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.04724 4.34596 2.64886 10.8691 2.1771

CAGE analysis