Hb_006588_190

Information

Type -
Description -
Location Contig6588: 142101-143503
Sequence    

Annotation

kegg
ID rcu:RCOM_0085220
description Ataxin-3, putative
nr
ID XP_012087931.1
description PREDICTED: ataxin-3 homolog [Jatropha curcas]
swissprot
ID Q8LQ36
description Putative ataxin-3 homolog OS=Oryza sativa subsp. japonica GN=Os01g0851400 PE=3 SV=1
trembl
ID A0A067JKS7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25061 PE=4 SV=1
Gene Ontology
ID GO:0008242
description ataxin-3 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52888: 118230-143726 , PASA_asmbl_52892: 142681-142827
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_190 0.0 - - PREDICTED: ataxin-3 homolog [Jatropha curcas]
2 Hb_011381_040 0.0758720921 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
3 Hb_000327_330 0.0847606327 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000800_020 0.086433143 - - PREDICTED: 3-phosphoinositide-dependent protein kinase 2 [Jatropha curcas]
5 Hb_007217_010 0.0865753478 - - PREDICTED: glycerol-3-phosphate acyltransferase, chloroplastic [Jatropha curcas]
6 Hb_000163_260 0.0910028 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
7 Hb_001009_140 0.0990613081 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
8 Hb_000318_220 0.0994071263 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005665_090 0.1007396363 - - PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase isoform X2 [Jatropha curcas]
10 Hb_000029_400 0.1029418156 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
11 Hb_002871_040 0.1034213279 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
12 Hb_003835_110 0.1051287808 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
13 Hb_021596_020 0.1056843287 - - hypothetical protein JCGZ_02034 [Jatropha curcas]
14 Hb_008375_030 0.1071148778 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X1 [Populus euphratica]
15 Hb_001504_010 0.1087643354 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
16 Hb_005332_080 0.1098487137 - - PREDICTED: succinate dehydrogenase [ubiquinone] iron-sulfur subunit 2, mitochondrial [Jatropha curcas]
17 Hb_000926_080 0.1103695702 - - PREDICTED: paraspeckle component 1 [Jatropha curcas]
18 Hb_001882_010 0.1109625213 - - -
19 Hb_001623_490 0.1111488438 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
20 Hb_000364_170 0.1128679387 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase CLF [Jatropha curcas]

Gene co-expression network

sample Hb_006588_190 Hb_006588_190 Hb_011381_040 Hb_011381_040 Hb_006588_190--Hb_011381_040 Hb_000327_330 Hb_000327_330 Hb_006588_190--Hb_000327_330 Hb_000800_020 Hb_000800_020 Hb_006588_190--Hb_000800_020 Hb_007217_010 Hb_007217_010 Hb_006588_190--Hb_007217_010 Hb_000163_260 Hb_000163_260 Hb_006588_190--Hb_000163_260 Hb_001009_140 Hb_001009_140 Hb_006588_190--Hb_001009_140 Hb_003835_110 Hb_003835_110 Hb_011381_040--Hb_003835_110 Hb_000364_170 Hb_000364_170 Hb_011381_040--Hb_000364_170 Hb_002871_040 Hb_002871_040 Hb_011381_040--Hb_002871_040 Hb_000029_400 Hb_000029_400 Hb_011381_040--Hb_000029_400 Hb_002027_320 Hb_002027_320 Hb_011381_040--Hb_002027_320 Hb_000318_220 Hb_000318_220 Hb_000327_330--Hb_000318_220 Hb_003687_080 Hb_003687_080 Hb_000327_330--Hb_003687_080 Hb_001623_490 Hb_001623_490 Hb_000327_330--Hb_001623_490 Hb_000086_270 Hb_000086_270 Hb_000327_330--Hb_000086_270 Hb_002218_020 Hb_002218_020 Hb_000327_330--Hb_002218_020 Hb_003071_030 Hb_003071_030 Hb_000327_330--Hb_003071_030 Hb_013405_070 Hb_013405_070 Hb_000800_020--Hb_013405_070 Hb_011671_340 Hb_011671_340 Hb_000800_020--Hb_011671_340 Hb_005511_130 Hb_005511_130 Hb_000800_020--Hb_005511_130 Hb_000800_020--Hb_011381_040 Hb_000984_220 Hb_000984_220 Hb_000800_020--Hb_000984_220 Hb_000212_250 Hb_000212_250 Hb_007217_010--Hb_000212_250 Hb_011476_030 Hb_011476_030 Hb_007217_010--Hb_011476_030 Hb_002986_090 Hb_002986_090 Hb_007217_010--Hb_002986_090 Hb_000392_450 Hb_000392_450 Hb_007217_010--Hb_000392_450 Hb_000094_100 Hb_000094_100 Hb_007217_010--Hb_000094_100 Hb_001504_010 Hb_001504_010 Hb_000163_260--Hb_001504_010 Hb_001882_010 Hb_001882_010 Hb_000163_260--Hb_001882_010 Hb_012438_030 Hb_012438_030 Hb_000163_260--Hb_012438_030 Hb_009476_130 Hb_009476_130 Hb_000163_260--Hb_009476_130 Hb_001703_040 Hb_001703_040 Hb_000163_260--Hb_001703_040 Hb_000120_890 Hb_000120_890 Hb_000163_260--Hb_000120_890 Hb_005665_090 Hb_005665_090 Hb_001009_140--Hb_005665_090 Hb_101334_020 Hb_101334_020 Hb_001009_140--Hb_101334_020 Hb_000589_170 Hb_000589_170 Hb_001009_140--Hb_000589_170 Hb_001009_140--Hb_000029_400 Hb_000116_250 Hb_000116_250 Hb_001009_140--Hb_000116_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.34014 7.33046 28.4231 13.6479 4.5327 4.80505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.1788 9.53993 3.69799 7.0508 13.6411

CAGE analysis