Hb_006588_200

Information

Type -
Description -
Location Contig6588: 144210-146534
Sequence    

Annotation

kegg
ID rcu:RCOM_0085230
description 3-beta-hydroxy-delta5-steroid dehydrogenase, putative
nr
ID XP_002527867.1
description 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
swissprot
ID Q9M392
description Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1
trembl
ID B9SPE8
description Reticulon-like protein OS=Ricinus communis GN=RCOM_0085230 PE=4 SV=1
Gene Ontology
ID GO:0005789
description reticulon-like protein b12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52888: 118230-143726 , PASA_asmbl_52893: 144319-145745
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_200 0.0 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
2 Hb_003185_010 0.0677012756 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
3 Hb_001780_020 0.0740353225 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003549_150 0.0805338231 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
5 Hb_003528_010 0.0829886078 transcription factor TF Family: MYB PREDICTED: myb-related protein 3R-1 [Jatropha curcas]
6 Hb_034552_030 0.0831063875 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
7 Hb_003994_230 0.0831492032 - - 7-dehydrocholesterol reductase, putative [Ricinus communis]
8 Hb_028872_090 0.0860353018 - - PREDICTED: urease [Jatropha curcas]
9 Hb_116349_070 0.0861444423 - - hypothetical protein JCGZ_21753 [Jatropha curcas]
10 Hb_000025_180 0.0862835831 - - hypothetical protein CISIN_1g024241mg [Citrus sinensis]
11 Hb_001408_040 0.0863403119 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
12 Hb_002320_040 0.0874133672 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
13 Hb_000603_150 0.0888152562 - - PREDICTED: guanine nucleotide-binding protein alpha-1 subunit [Jatropha curcas]
14 Hb_010381_090 0.0895058998 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
15 Hb_000948_230 0.0909607676 - - WD-repeat protein, putative [Ricinus communis]
16 Hb_000600_060 0.0916912207 - - PREDICTED: uncharacterized protein LOC105633515 isoform X1 [Jatropha curcas]
17 Hb_000260_330 0.0917010303 - - PREDICTED: uncharacterized protein LOC103438625 [Malus domestica]
18 Hb_172632_120 0.092071022 - - conserved hypothetical protein [Ricinus communis]
19 Hb_145880_010 0.0921842065 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
20 Hb_001511_060 0.0933155558 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_006588_200 Hb_006588_200 Hb_003185_010 Hb_003185_010 Hb_006588_200--Hb_003185_010 Hb_001780_020 Hb_001780_020 Hb_006588_200--Hb_001780_020 Hb_003549_150 Hb_003549_150 Hb_006588_200--Hb_003549_150 Hb_003528_010 Hb_003528_010 Hb_006588_200--Hb_003528_010 Hb_034552_030 Hb_034552_030 Hb_006588_200--Hb_034552_030 Hb_003994_230 Hb_003994_230 Hb_006588_200--Hb_003994_230 Hb_007416_300 Hb_007416_300 Hb_003185_010--Hb_007416_300 Hb_010381_090 Hb_010381_090 Hb_003185_010--Hb_010381_090 Hb_000317_470 Hb_000317_470 Hb_003185_010--Hb_000317_470 Hb_003185_010--Hb_003549_150 Hb_003185_010--Hb_003994_230 Hb_000402_080 Hb_000402_080 Hb_001780_020--Hb_000402_080 Hb_004195_200 Hb_004195_200 Hb_001780_020--Hb_004195_200 Hb_002375_010 Hb_002375_010 Hb_001780_020--Hb_002375_010 Hb_001347_040 Hb_001347_040 Hb_001780_020--Hb_001347_040 Hb_002248_080 Hb_002248_080 Hb_001780_020--Hb_002248_080 Hb_003549_150--Hb_007416_300 Hb_003549_150--Hb_010381_090 Hb_000603_150 Hb_000603_150 Hb_003549_150--Hb_000603_150 Hb_000617_100 Hb_000617_100 Hb_003549_150--Hb_000617_100 Hb_001051_080 Hb_001051_080 Hb_003549_150--Hb_001051_080 Hb_001408_040 Hb_001408_040 Hb_003549_150--Hb_001408_040 Hb_032920_060 Hb_032920_060 Hb_003528_010--Hb_032920_060 Hb_000185_070 Hb_000185_070 Hb_003528_010--Hb_000185_070 Hb_003528_010--Hb_003549_150 Hb_003528_010--Hb_010381_090 Hb_000205_300 Hb_000205_300 Hb_003528_010--Hb_000205_300 Hb_002320_040 Hb_002320_040 Hb_034552_030--Hb_002320_040 Hb_000020_150 Hb_000020_150 Hb_034552_030--Hb_000020_150 Hb_003464_080 Hb_003464_080 Hb_034552_030--Hb_003464_080 Hb_028872_090 Hb_028872_090 Hb_034552_030--Hb_028872_090 Hb_000120_430 Hb_000120_430 Hb_034552_030--Hb_000120_430 Hb_000948_230 Hb_000948_230 Hb_003994_230--Hb_000948_230 Hb_000720_040 Hb_000720_040 Hb_003994_230--Hb_000720_040 Hb_001318_280 Hb_001318_280 Hb_003994_230--Hb_001318_280 Hb_001511_060 Hb_001511_060 Hb_003994_230--Hb_001511_060 Hb_002936_010 Hb_002936_010 Hb_003994_230--Hb_002936_010 Hb_001427_160 Hb_001427_160 Hb_003994_230--Hb_001427_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.63924 8.29172 9.9379 11.9521 11.5195 7.90171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.18788 9.88715 9.43917 11.8762 3.97042

CAGE analysis