Hb_006588_210

Information

Type -
Description -
Location Contig6588: 148590-152491
Sequence    

Annotation

kegg
ID rcu:RCOM_0085240
description hypothetical protein
nr
ID XP_012087933.1
description PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JY68
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25063 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase hakai

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52896: 149931-152579 , PASA_asmbl_52897: 150720-152579 , PASA_asmbl_52898: 149397-152579 , PASA_asmbl_52899: 149397-152590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_210 0.0 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
2 Hb_000260_180 0.0589496715 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
3 Hb_001410_020 0.0694534882 - - cdk8, putative [Ricinus communis]
4 Hb_000340_400 0.0753752024 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
5 Hb_004870_050 0.076072206 - - PREDICTED: ATP-dependent RNA helicase DBP3 [Jatropha curcas]
6 Hb_000087_060 0.0765291175 - - protein transporter, putative [Ricinus communis]
7 Hb_002073_200 0.0768210898 - - Phosphatase 2A-2 [Theobroma cacao]
8 Hb_095296_010 0.0777446702 - - PREDICTED: syntaxin-32 [Jatropha curcas]
9 Hb_000886_050 0.0780531827 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
10 Hb_012239_020 0.0786424153 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
11 Hb_000861_080 0.0794233941 - - PREDICTED: protein ELC-like [Jatropha curcas]
12 Hb_000868_110 0.0795104755 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
13 Hb_003001_080 0.079882983 - - PREDICTED: uncharacterized protein LOC105644363 [Jatropha curcas]
14 Hb_000484_130 0.0800685853 - - splicing factor, putative [Ricinus communis]
15 Hb_012779_090 0.0808711839 - - PREDICTED: lipase member N [Jatropha curcas]
16 Hb_000738_020 0.0840350597 - - zinc finger protein, putative [Ricinus communis]
17 Hb_000359_040 0.0850296459 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005116_060 0.0855353818 - - PREDICTED: mitochondrial Rho GTPase 2 isoform X1 [Jatropha curcas]
19 Hb_003464_090 0.0870612588 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
20 Hb_162275_050 0.0872441287 - - PREDICTED: mRNA-capping enzyme [Jatropha curcas]

Gene co-expression network

sample Hb_006588_210 Hb_006588_210 Hb_000260_180 Hb_000260_180 Hb_006588_210--Hb_000260_180 Hb_001410_020 Hb_001410_020 Hb_006588_210--Hb_001410_020 Hb_000340_400 Hb_000340_400 Hb_006588_210--Hb_000340_400 Hb_004870_050 Hb_004870_050 Hb_006588_210--Hb_004870_050 Hb_000087_060 Hb_000087_060 Hb_006588_210--Hb_000087_060 Hb_002073_200 Hb_002073_200 Hb_006588_210--Hb_002073_200 Hb_000260_180--Hb_001410_020 Hb_012779_090 Hb_012779_090 Hb_000260_180--Hb_012779_090 Hb_162275_050 Hb_162275_050 Hb_000260_180--Hb_162275_050 Hb_005541_010 Hb_005541_010 Hb_000260_180--Hb_005541_010 Hb_000025_730 Hb_000025_730 Hb_000260_180--Hb_000025_730 Hb_001410_020--Hb_162275_050 Hb_001410_020--Hb_012779_090 Hb_000373_230 Hb_000373_230 Hb_001410_020--Hb_000373_230 Hb_001410_020--Hb_000025_730 Hb_004837_180 Hb_004837_180 Hb_000340_400--Hb_004837_180 Hb_005116_060 Hb_005116_060 Hb_000340_400--Hb_005116_060 Hb_003001_080 Hb_003001_080 Hb_000340_400--Hb_003001_080 Hb_006478_040 Hb_006478_040 Hb_000340_400--Hb_006478_040 Hb_007035_050 Hb_007035_050 Hb_000340_400--Hb_007035_050 Hb_001359_050 Hb_001359_050 Hb_000340_400--Hb_001359_050 Hb_060094_020 Hb_060094_020 Hb_004870_050--Hb_060094_020 Hb_003927_040 Hb_003927_040 Hb_004870_050--Hb_003927_040 Hb_000094_090 Hb_000094_090 Hb_004870_050--Hb_000094_090 Hb_002110_160 Hb_002110_160 Hb_004870_050--Hb_002110_160 Hb_000282_090 Hb_000282_090 Hb_004870_050--Hb_000282_090 Hb_004648_090 Hb_004648_090 Hb_004870_050--Hb_004648_090 Hb_001205_200 Hb_001205_200 Hb_000087_060--Hb_001205_200 Hb_002492_010 Hb_002492_010 Hb_000087_060--Hb_002492_010 Hb_001089_050 Hb_001089_050 Hb_000087_060--Hb_001089_050 Hb_000358_230 Hb_000358_230 Hb_000087_060--Hb_000358_230 Hb_000076_160 Hb_000076_160 Hb_000087_060--Hb_000076_160 Hb_000454_130 Hb_000454_130 Hb_000087_060--Hb_000454_130 Hb_000868_110 Hb_000868_110 Hb_002073_200--Hb_000868_110 Hb_013358_040 Hb_013358_040 Hb_002073_200--Hb_013358_040 Hb_002073_200--Hb_000025_730 Hb_000738_020 Hb_000738_020 Hb_002073_200--Hb_000738_020 Hb_164010_040 Hb_164010_040 Hb_002073_200--Hb_164010_040 Hb_095296_010 Hb_095296_010 Hb_002073_200--Hb_095296_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8642 22.9151 17.6293 10.7369 12.7363 9.29515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3336 16.1309 11.9565 10.5531 8.17617

CAGE analysis