Hb_006594_020

Information

Type -
Description -
Location Contig6594: 45560-46063
Sequence    

Annotation

kegg
ID tcc:TCM_000612
description hypothetical protein
nr
ID XP_011043545.1
description PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A061DGA0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_000612 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52907: 45449-46738
cDNA
(Sanger)
(ID:Location)		 018_K02.ab1: 45455-46172 , 038_F24.ab1: 45455-46246 , 047_E09.ab1: 45455-46363 , 053_O22.ab1: 45449-46273

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006594_020 0.0 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
2 Hb_005614_050 0.1187546219 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
3 Hb_007161_010 0.1253094849 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
4 Hb_001232_130 0.125589233 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
5 Hb_017434_050 0.1282439869 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
6 Hb_000380_020 0.1287907553 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
7 Hb_019654_090 0.1300043048 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
8 Hb_000264_020 0.1312653184 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
9 Hb_001894_170 0.1343454631 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
10 Hb_002759_240 0.1344711451 - - hypothetical protein EUGRSUZ_E01319 [Eucalyptus grandis]
11 Hb_000749_250 0.1370438991 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
12 Hb_002078_460 0.1391292948 - - -
13 Hb_003943_030 0.1392323602 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
14 Hb_007382_150 0.1395988229 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
15 Hb_000373_180 0.1399831239 transcription factor TF Family: Trihelix hypothetical protein JCGZ_25182 [Jatropha curcas]
16 Hb_001279_130 0.1403648291 - - hypothetical protein L484_017676 [Morus notabilis]
17 Hb_010417_020 0.140946929 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
18 Hb_005539_240 0.1423223583 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
19 Hb_005841_050 0.1423395365 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
20 Hb_002298_050 0.1430626474 - - serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_006594_020 Hb_006594_020 Hb_005614_050 Hb_005614_050 Hb_006594_020--Hb_005614_050 Hb_007161_010 Hb_007161_010 Hb_006594_020--Hb_007161_010 Hb_001232_130 Hb_001232_130 Hb_006594_020--Hb_001232_130 Hb_017434_050 Hb_017434_050 Hb_006594_020--Hb_017434_050 Hb_000380_020 Hb_000380_020 Hb_006594_020--Hb_000380_020 Hb_019654_090 Hb_019654_090 Hb_006594_020--Hb_019654_090 Hb_005614_050--Hb_007161_010 Hb_002756_020 Hb_002756_020 Hb_005614_050--Hb_002756_020 Hb_003551_050 Hb_003551_050 Hb_005614_050--Hb_003551_050 Hb_000363_200 Hb_000363_200 Hb_005614_050--Hb_000363_200 Hb_001538_140 Hb_001538_140 Hb_005614_050--Hb_001538_140 Hb_007161_010--Hb_000363_200 Hb_000179_050 Hb_000179_050 Hb_007161_010--Hb_000179_050 Hb_002078_460 Hb_002078_460 Hb_007161_010--Hb_002078_460 Hb_007161_010--Hb_003551_050 Hb_000753_130 Hb_000753_130 Hb_007161_010--Hb_000753_130 Hb_002307_090 Hb_002307_090 Hb_001232_130--Hb_002307_090 Hb_001946_320 Hb_001946_320 Hb_001232_130--Hb_001946_320 Hb_000749_250 Hb_000749_250 Hb_001232_130--Hb_000749_250 Hb_003943_030 Hb_003943_030 Hb_001232_130--Hb_003943_030 Hb_010589_040 Hb_010589_040 Hb_001232_130--Hb_010589_040 Hb_002936_050 Hb_002936_050 Hb_001232_130--Hb_002936_050 Hb_001894_170 Hb_001894_170 Hb_017434_050--Hb_001894_170 Hb_000373_180 Hb_000373_180 Hb_017434_050--Hb_000373_180 Hb_000723_190 Hb_000723_190 Hb_017434_050--Hb_000723_190 Hb_004414_050 Hb_004414_050 Hb_017434_050--Hb_004414_050 Hb_009314_010 Hb_009314_010 Hb_017434_050--Hb_009314_010 Hb_001279_130 Hb_001279_130 Hb_000380_020--Hb_001279_130 Hb_000380_020--Hb_000749_250 Hb_000380_020--Hb_005614_050 Hb_001143_090 Hb_001143_090 Hb_000380_020--Hb_001143_090 Hb_000638_020 Hb_000638_020 Hb_000380_020--Hb_000638_020 Hb_000019_060 Hb_000019_060 Hb_019654_090--Hb_000019_060 Hb_002056_060 Hb_002056_060 Hb_019654_090--Hb_002056_060 Hb_034406_020 Hb_034406_020 Hb_019654_090--Hb_034406_020 Hb_000072_080 Hb_000072_080 Hb_019654_090--Hb_000072_080 Hb_007645_080 Hb_007645_080 Hb_019654_090--Hb_007645_080 Hb_004951_040 Hb_004951_040 Hb_019654_090--Hb_004951_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
493.183 121.156 16.8432 130.629 304.118 231.32
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
618.646 1317.15 1367.58 315.817 73.2844

CAGE analysis