Hb_006594_030

Information

Type -
Description -
Location Contig6594: 52405-53799
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006594_030 0.0 - - -
2 Hb_000136_120 0.0250030294 - - PREDICTED: probable strigolactone esterase D14 homolog [Jatropha curcas]
3 Hb_000167_150 0.0250310854 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
4 Hb_001153_170 0.0300951407 - - PREDICTED: protein HOTHEAD [Populus euphratica]
5 Hb_089140_130 0.0367636043 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
6 Hb_009771_010 0.0418249493 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6 [Populus euphratica]
7 Hb_007617_030 0.0491143006 - - hypothetical protein JCGZ_26801 [Jatropha curcas]
8 Hb_000130_340 0.0500802693 - - -
9 Hb_001546_140 0.0518465947 - - Auxin-binding protein ABP19a precursor, putative [Ricinus communis]
10 Hb_011316_080 0.052787671 - - Cucumisin precursor, putative [Ricinus communis]
11 Hb_001946_070 0.0553539595 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
12 Hb_025048_050 0.0629682773 - - PREDICTED: protein PHYTOCHROME KINASE SUBSTRATE 3 [Jatropha curcas]
13 Hb_002929_030 0.0640401573 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
14 Hb_006586_060 0.0642696292 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
15 Hb_000847_040 0.0667522521 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 9 [Jatropha curcas]
16 Hb_000887_030 0.0678970284 - - serine carboxypeptidase, putative [Ricinus communis]
17 Hb_000735_190 0.068225744 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
18 Hb_001671_070 0.0684524624 - - kinase, putative [Ricinus communis]
19 Hb_000243_360 0.0691659708 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 7 isoform X1 [Vitis vinifera]
20 Hb_001329_060 0.070330114 - - Polygalacturonase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_006594_030 Hb_006594_030 Hb_000136_120 Hb_000136_120 Hb_006594_030--Hb_000136_120 Hb_000167_150 Hb_000167_150 Hb_006594_030--Hb_000167_150 Hb_001153_170 Hb_001153_170 Hb_006594_030--Hb_001153_170 Hb_089140_130 Hb_089140_130 Hb_006594_030--Hb_089140_130 Hb_009771_010 Hb_009771_010 Hb_006594_030--Hb_009771_010 Hb_007617_030 Hb_007617_030 Hb_006594_030--Hb_007617_030 Hb_000136_120--Hb_000167_150 Hb_001946_070 Hb_001946_070 Hb_000136_120--Hb_001946_070 Hb_000136_120--Hb_001153_170 Hb_025048_050 Hb_025048_050 Hb_000136_120--Hb_025048_050 Hb_000136_120--Hb_089140_130 Hb_000167_150--Hb_001946_070 Hb_001329_060 Hb_001329_060 Hb_000167_150--Hb_001329_060 Hb_006586_060 Hb_006586_060 Hb_000167_150--Hb_006586_060 Hb_000167_150--Hb_025048_050 Hb_001153_170--Hb_089140_130 Hb_001153_170--Hb_009771_010 Hb_011316_080 Hb_011316_080 Hb_001153_170--Hb_011316_080 Hb_001546_140 Hb_001546_140 Hb_001153_170--Hb_001546_140 Hb_001153_170--Hb_007617_030 Hb_089140_130--Hb_011316_080 Hb_089140_130--Hb_009771_010 Hb_089140_130--Hb_001546_140 Hb_000847_040 Hb_000847_040 Hb_089140_130--Hb_000847_040 Hb_009771_010--Hb_001546_140 Hb_009771_010--Hb_011316_080 Hb_002929_030 Hb_002929_030 Hb_009771_010--Hb_002929_030 Hb_009771_010--Hb_007617_030 Hb_007617_030--Hb_001546_140 Hb_000887_030 Hb_000887_030 Hb_007617_030--Hb_000887_030 Hb_031862_210 Hb_031862_210 Hb_007617_030--Hb_031862_210 Hb_007617_030--Hb_089140_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.07586 0.415786 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.84346

CAGE analysis