Hb_006594_080

Information

Type -
Description -
Location Contig6594: 111677-114680
Sequence    

Annotation

kegg
ID rcu:RCOM_1576660
description beta-glucosidase, putative (EC:3.2.1.21)
nr
ID XP_002513440.1
description beta-glucosidase, putative [Ricinus communis]
swissprot
ID Q5Z9Z0
description Beta-glucosidase 24 OS=Oryza sativa subsp. japonica GN=BGLU24 PE=2 SV=1
trembl
ID B9RI71
description Beta-glucosidase, putative OS=Ricinus communis GN=RCOM_1576660 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52909: 111688-114679
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006594_080 0.0 - - beta-glucosidase, putative [Ricinus communis]
2 Hb_005332_050 0.1313818972 - - hypothetical protein POPTR_0017s10650g [Populus trichocarpa]
3 Hb_003992_220 0.131626267 - - s-receptor kinase, putative [Ricinus communis]
4 Hb_167211_010 0.1318500877 - - PREDICTED: glutamate receptor 3.4-like isoform X1 [Jatropha curcas]
5 Hb_000442_170 0.1348705265 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
6 Hb_000313_230 0.1351628917 - - PREDICTED: uncharacterized protein LOC105636893 [Jatropha curcas]
7 Hb_005288_060 0.1354538248 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein At4g27190-like isoform X1 [Citrus sinensis]
8 Hb_001109_170 0.142237236 - - PREDICTED: urea-proton symporter DUR3 isoform X2 [Jatropha curcas]
9 Hb_001963_110 0.1426565518 - - -
10 Hb_001778_040 0.149968973 - - hypothetical protein VITISV_021035 [Vitis vinifera]
11 Hb_002308_060 0.1506397817 - - PREDICTED: cytochrome P450 704C1-like [Jatropha curcas]
12 Hb_000054_130 0.1523807904 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
13 Hb_001622_020 0.1524790213 - - -
14 Hb_000120_880 0.156719894 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
15 Hb_000776_020 0.160490754 transcription factor TF Family: M-type hypothetical protein JCGZ_25594 [Jatropha curcas]
16 Hb_017225_030 0.1614893573 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
17 Hb_170878_060 0.1632857261 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
18 Hb_124579_020 0.1646193697 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Jatropha curcas]
19 Hb_181463_020 0.1687026262 - - hypothetical protein JCGZ_26765 [Jatropha curcas]
20 Hb_000130_480 0.1697092784 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]

Gene co-expression network

sample Hb_006594_080 Hb_006594_080 Hb_005332_050 Hb_005332_050 Hb_006594_080--Hb_005332_050 Hb_003992_220 Hb_003992_220 Hb_006594_080--Hb_003992_220 Hb_167211_010 Hb_167211_010 Hb_006594_080--Hb_167211_010 Hb_000442_170 Hb_000442_170 Hb_006594_080--Hb_000442_170 Hb_000313_230 Hb_000313_230 Hb_006594_080--Hb_000313_230 Hb_005288_060 Hb_005288_060 Hb_006594_080--Hb_005288_060 Hb_004607_160 Hb_004607_160 Hb_005332_050--Hb_004607_160 Hb_005332_050--Hb_167211_010 Hb_000130_480 Hb_000130_480 Hb_005332_050--Hb_000130_480 Hb_007850_110 Hb_007850_110 Hb_005332_050--Hb_007850_110 Hb_000836_030 Hb_000836_030 Hb_005332_050--Hb_000836_030 Hb_001778_040 Hb_001778_040 Hb_005332_050--Hb_001778_040 Hb_170878_060 Hb_170878_060 Hb_003992_220--Hb_170878_060 Hb_003992_220--Hb_167211_010 Hb_003992_220--Hb_001778_040 Hb_002308_060 Hb_002308_060 Hb_003992_220--Hb_002308_060 Hb_001109_130 Hb_001109_130 Hb_003992_220--Hb_001109_130 Hb_001963_110 Hb_001963_110 Hb_003992_220--Hb_001963_110 Hb_000054_130 Hb_000054_130 Hb_167211_010--Hb_000054_130 Hb_167211_010--Hb_001778_040 Hb_001109_170 Hb_001109_170 Hb_167211_010--Hb_001109_170 Hb_001622_020 Hb_001622_020 Hb_167211_010--Hb_001622_020 Hb_124579_020 Hb_124579_020 Hb_167211_010--Hb_124579_020 Hb_001301_010 Hb_001301_010 Hb_000442_170--Hb_001301_010 Hb_000776_020 Hb_000776_020 Hb_000442_170--Hb_000776_020 Hb_000442_170--Hb_001963_110 Hb_000442_170--Hb_003992_220 Hb_000191_100 Hb_000191_100 Hb_000442_170--Hb_000191_100 Hb_000313_230--Hb_005332_050 Hb_001054_060 Hb_001054_060 Hb_000313_230--Hb_001054_060 Hb_000313_230--Hb_005288_060 Hb_000997_320 Hb_000997_320 Hb_000313_230--Hb_000997_320 Hb_001310_050 Hb_001310_050 Hb_000313_230--Hb_001310_050 Hb_000414_180 Hb_000414_180 Hb_005288_060--Hb_000414_180 Hb_000574_250 Hb_000574_250 Hb_005288_060--Hb_000574_250 Hb_010068_050 Hb_010068_050 Hb_005288_060--Hb_010068_050 Hb_002874_030 Hb_002874_030 Hb_005288_060--Hb_002874_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.320288 8.81623 10.9548 26.3988 0.0865495 0.184203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.297195 0.155889 3.31782 39.074 57.6284

CAGE analysis