Hb_006602_010

Information

Type -
Description -
Location Contig6602: 6919-8379
Sequence    

Annotation

kegg
ID rcu:RCOM_0814170
description virion binding protein, putative
nr
ID XP_012081972.1
description PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZS0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19305 PE=4 SV=1
Gene Ontology
ID GO:0051301
description tobamovirus multiplication protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52934: 6705-33368
cDNA
(Sanger)
(ID:Location)		 006_I12.ab1: 6787-27076 , 015_E06.ab1: 6741-8051 , 020_K12.ab1: 6739-31203 , 030_P07.ab1: 6705-27263 , 046_I10.ab1: 6715-27280

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006602_010 0.0 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
2 Hb_006602_020 0.0714875369 - - unknown [Medicago truncatula]
3 Hb_002154_050 0.0828749077 - - RNA binding protein, putative [Ricinus communis]
4 Hb_005779_100 0.0854658564 - - DNAJ [Theobroma cacao]
5 Hb_000700_090 0.0919324402 - - protein with unknown function [Ricinus communis]
6 Hb_005539_290 0.093271126 - - unknown [Lotus japonicus]
7 Hb_004735_010 0.0980005212 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
8 Hb_001902_050 0.0986587421 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
9 Hb_002357_040 0.1200559444 - - latex-abundant protein [Hevea brasiliensis]
10 Hb_000152_140 0.1231058968 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
11 Hb_000479_330 0.126710529 - - PREDICTED: uncharacterized protein LOC105644113 isoform X1 [Jatropha curcas]
12 Hb_000387_080 0.1298273191 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
13 Hb_000805_090 0.1326432258 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
14 Hb_103873_010 0.1329060257 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
15 Hb_001473_130 0.1336608447 - - PREDICTED: ubiquinone biosynthesis monooxygenase COQ6 [Jatropha curcas]
16 Hb_026048_100 0.1340772729 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
17 Hb_001476_100 0.1349929025 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000696_110 0.136302737 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
19 Hb_003057_120 0.1368310514 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
20 Hb_002025_320 0.1381169302 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]

Gene co-expression network

sample Hb_006602_010 Hb_006602_010 Hb_006602_020 Hb_006602_020 Hb_006602_010--Hb_006602_020 Hb_002154_050 Hb_002154_050 Hb_006602_010--Hb_002154_050 Hb_005779_100 Hb_005779_100 Hb_006602_010--Hb_005779_100 Hb_000700_090 Hb_000700_090 Hb_006602_010--Hb_000700_090 Hb_005539_290 Hb_005539_290 Hb_006602_010--Hb_005539_290 Hb_004735_010 Hb_004735_010 Hb_006602_010--Hb_004735_010 Hb_006602_020--Hb_000700_090 Hb_006602_020--Hb_005539_290 Hb_000387_080 Hb_000387_080 Hb_006602_020--Hb_000387_080 Hb_006602_020--Hb_005779_100 Hb_001902_050 Hb_001902_050 Hb_006602_020--Hb_001902_050 Hb_002154_050--Hb_005779_100 Hb_002154_050--Hb_005539_290 Hb_002154_050--Hb_006602_020 Hb_001473_130 Hb_001473_130 Hb_002154_050--Hb_001473_130 Hb_000479_330 Hb_000479_330 Hb_002154_050--Hb_000479_330 Hb_001396_230 Hb_001396_230 Hb_005779_100--Hb_001396_230 Hb_002357_040 Hb_002357_040 Hb_005779_100--Hb_002357_040 Hb_005779_100--Hb_001473_130 Hb_000700_090--Hb_001902_050 Hb_000152_140 Hb_000152_140 Hb_000700_090--Hb_000152_140 Hb_000700_090--Hb_004735_010 Hb_098709_010 Hb_098709_010 Hb_000700_090--Hb_098709_010 Hb_000696_110 Hb_000696_110 Hb_000700_090--Hb_000696_110 Hb_005539_290--Hb_001902_050 Hb_005539_290--Hb_000700_090 Hb_000671_100 Hb_000671_100 Hb_005539_290--Hb_000671_100 Hb_004735_010--Hb_001902_050 Hb_004735_010--Hb_006602_020 Hb_004735_010--Hb_000671_100 Hb_000442_160 Hb_000442_160 Hb_004735_010--Hb_000442_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
155.13 33.8733 9.10831 40.1521 181.696 432.471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
247.529 143.583 354.381 54.9744 24.2317

CAGE analysis