Hb_006602_020

Information

Type -
Description -
Location Contig6602: 26364-33363
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa009358mg
description hypothetical protein
nr
ID ACJ84762.1
description unknown [Medicago truncatula]
swissprot
ID Q9ZUM2
description Tobamovirus multiplication protein 3 OS=Arabidopsis thaliana GN=TOM3 PE=1 SV=2
trembl
ID B7FJ33
description Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52934: 6705-33368 , PASA_asmbl_52935: 30288-30752 , PASA_asmbl_52937: 28614-29020 , PASA_asmbl_52938: 26684-26842
cDNA
(Sanger)
(ID:Location)		 006_I12.ab1: 6787-27076 , 020_K12.ab1: 6739-31203 , 030_P07.ab1: 6705-27263 , 046_I10.ab1: 6715-27280

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006602_020 0.0 - - unknown [Medicago truncatula]
2 Hb_000700_090 0.0505438656 - - protein with unknown function [Ricinus communis]
3 Hb_006602_010 0.0714875369 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
4 Hb_005539_290 0.0807209285 - - unknown [Lotus japonicus]
5 Hb_000387_080 0.0831260753 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
6 Hb_005779_100 0.0853440038 - - DNAJ [Theobroma cacao]
7 Hb_001902_050 0.0874053667 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
8 Hb_026048_100 0.0880917973 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
9 Hb_000152_140 0.0884275031 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
10 Hb_002357_040 0.0914909862 - - latex-abundant protein [Hevea brasiliensis]
11 Hb_002154_050 0.0917374229 - - RNA binding protein, putative [Ricinus communis]
12 Hb_004735_010 0.0940986657 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
13 Hb_000805_090 0.094710391 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
14 Hb_001476_100 0.0965946231 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000696_110 0.0966521248 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
16 Hb_000057_060 0.0999252189 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
17 Hb_098709_010 0.1020306231 - - PREDICTED: protein argonaute 1 [Jatropha curcas]
18 Hb_002025_320 0.1022773522 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
19 Hb_003057_120 0.1035974712 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
20 Hb_010174_120 0.1042394492 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]

Gene co-expression network

sample Hb_006602_020 Hb_006602_020 Hb_000700_090 Hb_000700_090 Hb_006602_020--Hb_000700_090 Hb_006602_010 Hb_006602_010 Hb_006602_020--Hb_006602_010 Hb_005539_290 Hb_005539_290 Hb_006602_020--Hb_005539_290 Hb_000387_080 Hb_000387_080 Hb_006602_020--Hb_000387_080 Hb_005779_100 Hb_005779_100 Hb_006602_020--Hb_005779_100 Hb_001902_050 Hb_001902_050 Hb_006602_020--Hb_001902_050 Hb_000700_090--Hb_001902_050 Hb_000152_140 Hb_000152_140 Hb_000700_090--Hb_000152_140 Hb_004735_010 Hb_004735_010 Hb_000700_090--Hb_004735_010 Hb_098709_010 Hb_098709_010 Hb_000700_090--Hb_098709_010 Hb_000696_110 Hb_000696_110 Hb_000700_090--Hb_000696_110 Hb_002154_050 Hb_002154_050 Hb_006602_010--Hb_002154_050 Hb_006602_010--Hb_005779_100 Hb_006602_010--Hb_000700_090 Hb_006602_010--Hb_005539_290 Hb_006602_010--Hb_004735_010 Hb_005539_290--Hb_001902_050 Hb_005539_290--Hb_002154_050 Hb_005539_290--Hb_000700_090 Hb_000671_100 Hb_000671_100 Hb_005539_290--Hb_000671_100 Hb_003057_120 Hb_003057_120 Hb_000387_080--Hb_003057_120 Hb_001366_220 Hb_001366_220 Hb_000387_080--Hb_001366_220 Hb_000057_060 Hb_000057_060 Hb_000387_080--Hb_000057_060 Hb_010174_120 Hb_010174_120 Hb_000387_080--Hb_010174_120 Hb_011174_070 Hb_011174_070 Hb_000387_080--Hb_011174_070 Hb_005779_100--Hb_002154_050 Hb_001396_230 Hb_001396_230 Hb_005779_100--Hb_001396_230 Hb_002357_040 Hb_002357_040 Hb_005779_100--Hb_002357_040 Hb_001473_130 Hb_001473_130 Hb_005779_100--Hb_001473_130 Hb_000365_360 Hb_000365_360 Hb_001902_050--Hb_000365_360 Hb_001902_050--Hb_004735_010 Hb_026048_100 Hb_026048_100 Hb_001902_050--Hb_026048_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
312.914 64.5017 19.6864 58.2498 300.363 550.099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
375.948 241.45 448.408 65.9629 27.2044

CAGE analysis